RNA id: XR_005641487.1



Basic Information


Item Value
RNA id XR_005641487.1
length 1114
RNA type transcript
GC content 0.50
exon number 8
gene id LOC120572742
representative False

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 15086865 ~ 15121956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCGGAGATGGGGAGAGAAGTTTGCCTGCGGCGCAGTCCAGTGAACGTTTAGCGTGTATCATTTAGGGAACAGCAACAAGAGCCTCCGGAGAAGCTTTCCAAGGATTGTTGAGGAATATCTGACTGACTCAGAAACACCACTCTCcaagttgactttttttttggctcttttgaagaaaaaaacaaaaaacaatatacCTTTCCTTATCATTGATGTCGCCAAACTAGTGGGAAGCTCGGGTCAGTAGGACAGCGGCCGCACGCGGACTGTTGTCTGTCGGAGGGTGCTTTTTAAATTTAGGTTCCCGGAGAAGGAAGAACAGAGCGAAACagaaggaaaaaagaagaagaagaataagacAGTCCAAGAGAAGGCGATAAAAGAGTCTGACTCAGAATGAATAACAACAAGATCGAGAAAGAAAACGAGCAGAGTGAATTCACCAACCACGAAGAGGAGGTCCGAACACTATTTGTCAGTGGGCTACCACTGGATATTAAGCCGCGGGAGCTCTATCTCCTGTTCAGACCATTTAAggGCTATGAAGGCTCCTTGATAAAACTCACTTCTAAACAGCCAGTGGGGTTTGTCAGCTTTGACAGCCGATCAGAAGCGGAGGCTGCTAAGAATGCCTTGAACGGGGTCCGGTTTGATCCAGAGATCCCCCAGACCCTTCGGCTGGAGTTCGCCAAGGCAAACACCAAGATGGCCAAGAACAAGCTGGTTGGCACCCCCAACCCCCTTCCCTCCCAGCAGAGCCCCGGGCCACAGTTCATTAGCAGAGACCCATATGAGCTCACAATGCCCGCTCTATATCCCAGCAGCCCAGACGTGTGGGCATCATACCCGCTGTACCCGGCGGAGCTGTCGCCGGCCCTCCCACCCGCTTTCACCTACCCCTCCTCGCTCCACGCTCAGAGGCATCATCCGTACTACTGAAAGCTTCAGTGGTTTGCATCATCATTTGACCATCACCTACTTCATTATTAAATCCCTCCTTTTCAACCAACCATGATCCAGTTTATTGAGGCCTTCTAATCTGCACAGCTCCACTATTCGCTGGCTCCCACCTGCAGATGGAACTCCTCAGGGATGGAAGTCCAGGCAGTTCTGC

Function


GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU193296 lncRNA downstream 15498 15079305 ~ 15082030 (-) True G143281
XR_005641731.1 lncRNA downstream 23336 15070511 ~ 15074192 (-) True LOC120573482
TU193221 lncRNA downstream 408724 14681151 ~ 14688804 (-) True G143218
TU193203 lncRNA downstream 480967 14613684 ~ 14616561 (-) True G143202
TU193121 lncRNA downstream 978328 14116827 ~ 14119200 (-) True G143156
TU193307 lncRNA upstream 68047 15189996 ~ 15192161 (-) True G143292
TU193374 lncRNA upstream 154764 15276713 ~ 15286398 (-) True G143317
TU193445 lncRNA upstream 192016 15313965 ~ 15316787 (-) True G143344
TU193453 lncRNA upstream 211934 15333883 ~ 15334788 (-) True G143348
TU193463 lncRNA upstream 241646 15363595 ~ 15365593 (-) True G143356
XM_039821499.1 mRNA downstream 49841 15045857 ~ 15047687 (-) True LOC120572262
XM_039822982.1 mRNA downstream 52565 14915697 ~ 15044963 (-) True LOC120573318
XM_039821495.1 mRNA upstream 9512 15131461 ~ 15133886 (-) True LOC120572259
XM_039822123.1 mRNA upstream 71439 15193388 ~ 15203101 (-) True LOC120572732
XM_039822127.1 mRNA upstream 81848 15203797 ~ 15209767 (-) False mfsd8
XM_039822126.1 mRNA upstream 81848 15203797 ~ 15209767 (-) True mfsd8
XM_039821840.1 mRNA upstream 94746 15216695 ~ 15226951 (-) True LOC120572502
TU192812 other downstream 2494910 12598753 ~ 12602618 (-) False rpl34
TU192795 other downstream 2682373 12413754 ~ 12415155 (-) True G142916
unassigned_transcript_698 other downstream 2686412 12411043 ~ 12411116 (-) True trnai-aau_26
XR_005641645.1 other downstream 3034102 11995110 ~ 12063426 (-) True LOC120573137
unassigned_transcript_697 other downstream 3140129 11957329 ~ 11957399 (-) True trnag-gcc
unassigned_transcript_699 other upstream 232298 15354247 ~ 15354335 (-) True trnar-ucu_16
XR_005641408.1 other upstream 897708 16019657 ~ 16043319 (-) True acap1
TU194121 other upstream 2126002 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other upstream 2126139 17248088 ~ 17249554 (-) False LOC120572513
TU194183 other upstream 2623005 17744954 ~ 17752989 (-) False tbc1d19

Expression Profile