RNA id: XM_039822171.1


Basic Information

Item Value
RNA id XM_039822171.1
length 2449
RNA type mRNA
GC content 0.61
exon number 7
gene id LOC120572753
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36637497 ~ 36646194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGTTGTCGGTCCACAACTTGAGACTAGAGAAGATGGCGGTGAACGTGATGCTGGTTTCCTCCGTGGACTACAATCTGTCTAAAGCGGAGATTCTGAGAGCGATCGTCGCCGATAAACTGACCGCCGCCGCGCAGGAGATCTTAGCGGTGGTCGAGAGAACTCTGGCCGGATACGAGGAGGAGACCTCGGACCTGAGGGAGGAGAACGAGCGGCAGAGGAGGCTGCTGGAGCTTCTCCTGCAGCCTCGGGTCACTCTATGCAGGACAGATGAACCTGCGtgtgaagaagaggaggagtcATCTAGACGATGGCAACAAAGGCccaaggaggaagaggaagagcagcAGACATCCGTTCATACGACAGCTGACACCATCAGTCCCCTAAAGGatgtggaggaggaggggagccCGGACGCCTGCCACCCcgctgaggaagaggagggtgaAGAGTGTGCCGAGGAGGCGGCACAGAGCCCCGGTCTGGACCATGAGGCGGCACAGAGCCCCGGTCTGGACCATGAGGCGGCACAGAGCCCCGGTCTGGACCAGGAGGCTCTGACGGAGCCGGGGCAACACGTACCAGACACAAGGCTCAGaGCTGGGACTCAGAAGAGGAAGCTCAGGAAGGCTCTGACCCTGCGAGTCTGTCTGTTGAAGGACTCTCAGACCAAGACGCTCCTGAAAGGAGtgttaaagtctCCGATGAAGCATCTGCGGGTCCCCCGAGGCCTGCAGGAAGCGGACTTCCTGGACCTGCTGAGGTCCACCTTCCCTCAGCTGATTGGCCCGTTTGAAGCCTTCACCACCGACGCCACCAGGAAACTGACACCGCTGGCGGCCCGGGCGCTGACGCCAGAGGAGATCAGGAGGTCCATCAGGTCCTCGGGGAAAGGAAGGTCGGCCTTGTACGTCCGAGTGAAGGCAGCGAAGACATCCCTGACGAGCACGGAGCAACTTCCTGTCCCTCAGCAGAGAGAACAGGAAGCCGCCGGggacacaggaagtgatgtaaACAGGGAAGATTTCGGCAGTTCCAACAACAGTCCTgtagggagagaggagagcgaCGAGGCGGCCGGTCCGTCCCGCAGGTCGAGGCGGCAAAAACAGACGGAAACTGAGGAACAACGGCGAGCCGGGACATCAGAAGAAGACGACGCCGCTGCCCTTTCTTCTTCTGCCGCTGACAGCGAACGGGACGACGGAGACGACGACGATGATGGCGAGTGGGAACCAGGCGAGCgtgacgaggaggaggagccaAAGGAGTGCCAAGCTGccgagaggagagggaggcggAACGCGCTCGGagtcaaaaagaagaaaagggaaCCGAGCCGCGGCGGCGCTCCCGTGTCGTGCAGAGTGTGCCACGCTCTGCGCGGGTCGACCAGCATGCTGATCAAACACGCCGTGAGTCACGTGGACGAGCCCGAGGGGCTCTGCGGCGTGTGCGGACGGCGTTGGGAGTCCGCGGAGGAGCTGAGGAGTCACCTGCAGAGTCACCAGGAGACGCACGGCTGCGACGTCTGCGGGAAGGCCTTCCTCTCCGCCGTCACTCTCCGCCGGCACGCCGCTCTGCACACGGGCGAGCGGCCGTACAAGTGCGACATCTGCGGCAAAGCGTACACGCTCAAATCCAGCCTGAGCGCGCACCGGTTCCAGCACATGGAGGAGAAACCCCACAAGTGCGACGTCTGCGGCCAGTCGTTCAGCTCCAAGTCCCTGCTGAGGGTCCACGGCGCCAAGCACACGGGGGAGAAGCCGTTCCGCTGCGACGTGTGCGGCCAATCGGTCAGCCACTTCCGAGCGCTGTCGCTGCACAAGATGGCGCACGCCGGCGATCGGCGCTACAGTTGCCCGGATTGCGGGAGGCGCTTTTTGACTCCCGGGAAAATGAGAGAACACGCAAAAATCCACACGGAGCGAGCCCGGAGCCACCTCTGCGACGTTTGCTGCAAAGCGTTCCACACGGGAGGCGAGTTGCGGGTCCACATGAAGACGCACGGCGAGGAGAAGACGGTGTGCGGCGAATGCGGTAAGGGGTTGTCGTCTCTCGGCGCCCTGACGAGACACATGAGGATCCACACAGGGGAGAGACCGTACGAGTGCTCCGAGTGCGGGCGGACCTTCAAGTCCATGTCCACGCTCAGGGGTCACGAGAAAACGCACACAGGCGCCAAGCCGTTTGTGTGCGCCGTTTGCGGCAAGGCGTGCGCTCGCAAGGAGTACCTGAACGTCCACATGAGGACGCACAACGGGGAGAGACCGTACAAGTGCACGCTCTGCGACCGGGCCTTCACGCAGAGCCACTGTCTGAAAACGCACGTGATGAAGAGCCACCAGGGCGAAGCGGAGAGAGCCGCGGACGCGCTCGAGTCCTGAAGCTGTTTgattgctttttcttttttgtattaaagaggaattacagtttttcaacctgga

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202179 lncRNA upstream 50015 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA upstream 50015 36585539 ~ 36587482 (+) False G149492
TU202175 lncRNA upstream 106303 36493053 ~ 36531194 (+) True G149489
XR_005641598.1 lncRNA upstream 156056 36481086 ~ 36481441 (+) True LOC120573024
TU201864 lncRNA upstream 169700 36465326 ~ 36467797 (+) False LOC120572806
TU202229 lncRNA downstream 13992 36660186 ~ 36662049 (+) True G149527
TU202219 lncRNA downstream 16037 36662231 ~ 36688498 (+) True G149524
TU202220 lncRNA downstream 30267 36676461 ~ 36688498 (+) False G149524
TU202221 lncRNA downstream 30267 36676461 ~ 36688498 (+) False G149524
TU202237 lncRNA downstream 31094 36677288 ~ 36702681 (+) True G149535
XM_039822261.1 mRNA upstream 161255 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA upstream 161255 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA upstream 161255 36464496 ~ 36476242 (+) True LOC120572806
XM_039822350.1 mRNA upstream 184304 36444499 ~ 36453193 (+) True LOC120572851
XM_039822353.1 mRNA upstream 210201 36420835 ~ 36427296 (+) True LOC120572853
XM_039822416.1 mRNA downstream 5242 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA downstream 5242 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA downstream 5975 36652169 ~ 36657906 (+) False LOC120572900
XM_039821959.1 mRNA downstream 72292 36718486 ~ 36720358 (+) True LOC120572642
XM_039823028.1 mRNA downstream 450718 37096912 ~ 37101599 (+) True LOC120573341
TU201846 other upstream 293919 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 294019 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 375125 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 385474 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 514779 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 291212 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 704881 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 921719 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1030801 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1030801 37676995 ~ 37681109 (+) False G149843

Expression Profile