RNA id: TCONS_00006827


Basic Information

Item Value
RNA id TCONS_00006827
length 2823
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_003481
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25583950 ~ 25618583 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTAATCAGACAAGTGGATGCGTGTTGCTCTTCCCTGTTTGCCAGTCTCCTTCCAGAGGTGTGACAGCAGCCCTTTACTCCTTATAACCAGGCTGGATGCTGAAATATGACAGAAGATGTTGTAATATGAGCGATGCAGGCAGGCTGGATGTGCTATGCATGAAGGAGAGGAAGGATGTGACTGAGGAGAGAAGAGCCGCAGATGAATATTAATTGGCATCGCAGCCTCAGCAGTAAATTGAGAAGTTGCACAGTGGCTCCCACCACAGGCCTCTGGGATACTGCAGAACGTGGCCCTTGACGCTGGATGACATGTCTCACGGGACTCAAACTACAAGGAGCTGAGGATTGATCGAAAGCTCAGTTCAGAAGACTTCCCATTTTGTTCTATGGAGGTCAAAGGTCGCGTGATCACTGCCATGGGCTTAGGATCACCTGATGTCCAAGGCTGCCAGGACAGCAAACTACAAGCAGAGCGAGTCTCAGAGCTGCAGGAGCGAAAACAGAGTCTGCAGAGTCTTCTGAACAGTCGACTTGGAGAACTGCGACAAGTCTGTCTCCTGGAGGCGGAGCTCACAGGAAAACTTCCACGGGATTTTCCTTTAGAAGAAGGAGAACGACCTCCATTTGTTCAACGCCGATCTGGATTGCCTCCTTATGTCACCTCAAAAGGAGACGATGACGCAGGTCAGCGGCGGCAGATGAAGGCTCTCTTTAGTGGTGCCCTTCGCCGGAGCATTGATTCTGATAAAAATGCACTGCACAGTAAGAGGACTGTTCATCGGGGATGCCATACAGAGGAAACTGTGAAGTCAGAGAGCAGTTCGATGTCAGACTCCACATCACATGACAACGAGGACTCATCTCCCAGTGTGGCACCTGAGCATCGCTCCCTGTCTCACCCTCGTCTGGCCCCGAGCAGTCCTGACAGTCGGCTCTGCAGAAAACTATCGCCTGTGGAGATTTACTATGAGATGAGGACTCGGCGCAACTCTGCCTCAAGCTCTGTGAGCCCAAGCCACTCACTCCCGAGAAGTGCATCTAATGTGGAGGGCAGAAGTGTTCCAGCCACACCACTGTTGTCCCGCACCGCACCTATCAGCGTCCATGTGAGGCCGGAGGTGTCTGGTGGCATTGCACTAAAGCAGTGGTGCGGAAGTCCGGATGTTCCTCAGTTTGTCCCATTGGCATCTCTGGAGGGTTCTTCGTCAGAGCGTCGCAGCTGCCCGTACAGCTCTCGAGCCCGTCGTAGCAACAGTTCAGAGGCGCTACTTGACCGCTCAAGCCTTCCTGAACCCGCACCTCCCCGAAATGGCATGCCAAACCGAGCTGGACCATACAAGAGCTCCGAGTCCCTCACTGATGGCAAGCTCCGTCAGATATACCAAGGCAGCCCAGAGAGGCAGTTGATGGGATTTAAAGACCAGGGTCGCATGCGCTCCTCTCTTGGAGGACAAAGCAGTGGCACTGGTTACAACGAGATTTTAATGGACTACATTTGGGGTAAACAGCAAAAGAGGCCTGTCCAGATTCCGCAAAGCCAGTCAGCAGGACGAATCTGGCCGGACTTCTCCACTCCTCCTTCGGGTACTCCTCCACATTATAATGGTTTCTCTCATTCGCAGTTACATCTGGCCACCGCTCCCTCTTCCTATAGCCCAATGCTGTTGCGGGGCCAAGAAGCCGAGCCCCGTCGGGTCAAAGTGACGAGAACAAAATCCTGCGGACCCTTCATCCCTTTACAGCAGCACCCACAGGATGCGGTGCTGTTCTCTGCGTATGATCCTTCATCAGCGTCCACCACCTCGTCTATTCCCAATCTGCTCCCTCACCACACTGAGCTGTCCACCGCTGCATCGTTCAGCCGCAGACCAGCTCAGTTCTCTCTGCCTACTCCCGAGGACTCGACCCGCAGTCTACACAAGGCACTGGCTCTGGAGGGCCTGCGGGACTGGTATCTGAGGAACGCCTTGGGCTACTCCACTACAGCCAAAGGCCATGATGGACTGTCCATGCGCCACTCACACACTCACCACCTGGTGCACCAGCCTCAGTCCATTGCAGCCGACCCACTGTACTCCGTACACCGTCAAATACCTCAGTCAGCTTCATTTCACGGCCATCCTTTGCATGCCAGGTCTGTGGAGCTCTCTCTGTACCCAGAGCCCTTTCCTTCAGAAGGGACCACTCAGAAAGAGTCCGGCTCTGAGCCTCCTTCACCTGGAACACTGGTCTGACCAGCAGCCAAACACACACCGGATTTGAAATGcaacatatatataataatatttgatgCAAAATTACATCTATAGGTATGCAACAGTCCGAAACTGTGCTCAAATACtagaacaaaaatatataatgcatTCTTTGTAGCATAAATGCTGCCTCacaataaaaaagaaagcaaaacaaaacagcatttaatttaaacattaaaatataccaagtggtgctcactgcagagctatttgggcagagctgagctccagtgagcttgagctctcgctcctcctttctttcacttcttctacgagtgatgtcactgggggtagggttaggggtggggttggtgcacgcattaaaacagcttatagcaggaggagcgagagctcatgctccccctcgctggagctcagctctgcacaaatggctctgcagcgagcagtgttTCAAATATACAGCTTTGAAAAAATAAGGCCTTTGAAAATTCACAATTGAATTAACAATTGACAGTTATGTTTTTGAATAAATGCTTTTGGTTTTATTCTGTGAACTTCaagtttgaaataaaaatattgtcgTTTAGAGCATATTTTTGC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0120103 centriolar subdistal appendage cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-93 Predicted to be located in cytoplasm. Predicted to be part of centriolar subdistal appendage. Orthologous to human CCDC120 (coiled-coil domain containing 120).

Ensembl:

ensembl_id ENSDART00000111961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006823 lncRNA upstream 35404 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006816 lncRNA upstream 101713 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA upstream 101713 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00008402 lncRNA upstream 324953 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008616 lncRNA downstream 214286 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 573433 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008618 lncRNA downstream 610998 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006845 lncRNA downstream 780829 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00006846 lncRNA downstream 781555 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006824 mRNA upstream 7751 25560072 ~ 25576199 (+) False XLOC_003480
TCONS_00006826 mRNA upstream 7752 25560632 ~ 25576198 (+) True XLOC_003480
TCONS_00006825 mRNA upstream 23122 25560095 ~ 25560828 (+) False XLOC_003480
TCONS_00006822 mRNA upstream 33105 25539698 ~ 25550845 (+) False XLOC_003479
TCONS_00006820 mRNA upstream 64113 25504215 ~ 25519837 (+) False XLOC_003478
TCONS_00006829 mRNA downstream 4808 25619892 ~ 25624972 (+) False XLOC_003482
TCONS_00006830 mRNA downstream 4848 25619932 ~ 25631442 (+) True XLOC_003482
TCONS_00006831 mRNA downstream 18957 25634041 ~ 25679133 (+) False XLOC_003483
TCONS_00006832 mRNA downstream 23088 25638172 ~ 25679721 (+) False XLOC_003483
TCONS_00006833 mRNA downstream 23144 25638228 ~ 25675690 (+) True XLOC_003483
TCONS_00006817 other upstream 100980 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 105532 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 281393 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 456088 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 543313 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006838 other downstream 462863 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 989527 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 1905372 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 3737017 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 3951663 29566747 ~ 29571528 (+) True XLOC_003523

Expression Profile

//