RNA id: XR_005641500.1


Basic Information

Item Value
RNA id XR_005641500.1
length 384
RNA type transcript
GC content 0.50
exon number 3
gene id LOC120572849
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36117298 ~ 36130103 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGgtgaaaactaaacagaaaaagGCGGGGATAGTTTCTTTGTGTAGGCAGCAACGTGAAGAAAACAAACGTACCCGGGAACACGGTGCAGCGCGAGGAGACGGAACGAGGTCGGCACATGAAGTTAGCAGACAGTTAGCATGGACTCTACAGGACAATATTCCTAACCTGGAGGAATTCTTTCCATCTGGGGACACTTCCGGACTACAGGAATATTAATAAGACAGGAAAGGACGGGGACTGGAGGTTTAGGACAGACTCCAGCTCATCTGTGGGACGAGACCCTTCTGACTTCAGGACGTCCGTCTGGATTAGTTCCCCCTGAAGAACAAGAATGAGTTCTCCACAAAAGAATCCAGAGTGAGTCCACCAGCCCCAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201775 lncRNA upstream 79029 35700526 ~ 36038269 (+) True G149211
TU201745 lncRNA upstream 99697 35729890 ~ 36017601 (+) True G149194
TU201746 lncRNA upstream 99697 35731474 ~ 36017601 (+) False G149194
TU201740 lncRNA upstream 120686 35843914 ~ 35996612 (+) True G149191
TU201808 lncRNA upstream 186277 35883730 ~ 35931021 (+) True G149235
XR_005641544.1 lncRNA downstream 30921 36153639 ~ 36159800 (+) True LOC120572973
TU201831 lncRNA downstream 48939 36171657 ~ 36213688 (+) True G149256
TU201833 lncRNA downstream 54687 36177405 ~ 36182828 (+) True G149258
XR_005641575.1 lncRNA downstream 101464 36224182 ~ 36231995 (+) True LOC120573000
XR_005641519.1 lncRNA downstream 176642 36299360 ~ 36305247 (+) True LOC120572955
XM_039822374.1 mRNA upstream 296851 35815893 ~ 35820447 (+) True LOC120572867
XM_039822478.1 mRNA upstream 315365 35799725 ~ 35801933 (+) True LOC120572944
XM_039823253.1 mRNA upstream 441654 35653002 ~ 35675644 (+) True LOC120573495
XM_039823252.1 mRNA upstream 543030 35560450 ~ 35574268 (+) True LOC120573494
XM_039822452.1 mRNA upstream 641640 35467836 ~ 35475658 (+) True LOC120572927
XM_039822404.1 mRNA downstream 216913 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 248161 36370879 ~ 36401016 (+) True LOC120572637
XM_039822353.1 mRNA downstream 298117 36420835 ~ 36427296 (+) True LOC120572853
XM_039822350.1 mRNA downstream 321781 36444499 ~ 36453193 (+) True LOC120572851
XM_039822261.1 mRNA downstream 341743 36464461 ~ 36476242 (+) False LOC120572806
TU201707 other upstream 688255 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 831564 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 831743 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 974812 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 989095 35122722 ~ 35128203 (+) True G149096
TU201846 other downstream 216930 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 216930 36339648 ~ 36343478 (+) False LOC120572889
TU202320 other downstream 814688 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 1228357 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1445195 37567913 ~ 37570708 (+) True G149671

Expression Profile