RNA id: XM_039822353.1


Basic Information

Item Value
RNA id XM_039822353.1
length 1204
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120572853
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36420835 ~ 36427296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGAGCAGCCACAGAGGAGAGCTGCTGGAtttcagagacaaagagaggaatggaggaccAGACCTCCGACCAGAACCCGGAGCAGCGGAGCAACAAGGTCCCCAGAAGACAAGCAGCAGGCTCGGACTCTGATACCACCgatgttcagaaacggagAAGACAGGGACTCAAATGTCACCACTGTCagcactgtgacaaatccttcacaacatcatcatatttaaagattcatcagagagttcacactggagagaatctgcacagctgtgatcaatgtggggcagctttcacacgacGGGGTGAAGTTAAAATCCATCAACGCACTCACACTGgggagaagccgtacagctgtgatcaatgtggggcagctttcacacgacAGGATAGCCTAACAAAACATCTACGCAGTCACACGGGAGAGAGGCGATTctgctgtgatcaatgtgggaaaACCTTTAGTGAGAGTTGCGGTCTTATAAaacaccagcgcattcacactggagagaagccgtacagctgtgatcaatgtggggcagcgtTCACAGAACTTGGTCACCTTAAATCTCACAAAtacattcacactggagagaagctgtACGTCTGTCAATGTGGAAAAGCTTTCAGAACACTGGGTCCCCTTAAATGTCACCAACGCactcacactggagagaagccgtactgttGTAAACTATGTGGGAAAGCTTTTGCTGACAGTGGTACCCTTAAATGCCACCTGCgcactcacacaggagagaagccatacagctgtgatcaatgtgggaaaGTGTTTTCTCATAGTAATGGACTTAAATATCACCAGCGCAGTCACGCTGCCTCGTTGTGAACATGTTTcagagccaagctgtttcctcctgcctcctcctcataccctgatagctgtgttgttatattctgatcttctctccacattgaaggctgaccagcAGTAACTTTATGTTCAGAGCTTTGCTATGACTTCATACTGGCCTGCCCCAACCTCCCCAAAATCCTGCTGTCGTCACACACTATGTGGACATGTTCACACAGATGTTCACACATTTCTGCTTGGAAGAAGTGGGTCAGAGCCCGGGAAGCACTTTCTGAtttagtgtgttttatgatttctGATCAATTTGGatgtttcattcatttattttagttaaagtcatagcgccccctagtggcaacaggaaatagacctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201859 lncRNA upstream 32129 36388253 ~ 36388706 (+) True G149275
TU201855 lncRNA upstream 32714 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA upstream 33112 36386616 ~ 36387723 (+) False G149274
TU201787 lncRNA upstream 43949 36368400 ~ 36376886 (+) True G149216
TU201782 lncRNA upstream 102099 35898112 ~ 36318736 (+) True G149212
TU201864 lncRNA downstream 38030 36465326 ~ 36467797 (+) False LOC120572806
XR_005641598.1 lncRNA downstream 53790 36481086 ~ 36481441 (+) True LOC120573024
TU202175 lncRNA downstream 65757 36493053 ~ 36531194 (+) True G149489
TU202179 lncRNA downstream 143339 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA downstream 158243 36585539 ~ 36587482 (+) False G149492
XM_039821956.1 mRNA upstream 19819 36370879 ~ 36401016 (+) True LOC120572637
XM_039822404.1 mRNA upstream 77009 36339631 ~ 36343826 (+) True LOC120572889
XM_039822343.1 mRNA upstream 290732 36117298 ~ 36130103 (+) True LOC120572849
XM_039822374.1 mRNA upstream 600388 35815893 ~ 35820447 (+) True LOC120572867
XM_039822478.1 mRNA upstream 618902 35799725 ~ 35801933 (+) True LOC120572944
XM_039822350.1 mRNA downstream 17203 36444499 ~ 36453193 (+) True LOC120572851
XM_039822261.1 mRNA downstream 37165 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA downstream 37192 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA downstream 37200 36464496 ~ 36476242 (+) True LOC120572806
XM_039822171.1 mRNA downstream 210201 36637497 ~ 36646194 (+) True LOC120572753
TU201846 other upstream 77257 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 77357 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 158463 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 168812 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 298117 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 510110 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 923779 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1140617 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1249699 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1249699 37676995 ~ 37681109 (+) False G149843

Expression Profile