RNA id: XM_039822374.1


Basic Information

Item Value
RNA id XM_039822374.1
length 907
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120572867
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35815893 ~ 35820447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAagagaggatggagagggaTGAGGCTTCAACCCACAAGCCCAAAGTGGGCAAATCAGGGCACAAATGTCCAATTTGTGGGCTTGAGTACAATGATTTGATGCAACACCTGAAACTAGGTGAACAGGTGTGCAACAAAACCGAACTGAACCTTCTCTGCAAGTTGTCACACAGACATTTCACGGCCAACTTGGATTGCCCGGTCCGACTGTGCGACTCCAGGAAAATAAACAGGCTGGACAAGCACCTGCGGAAAGTGCACAAGCTGGGGAACAATATGGTGACATTATACGTCCAAAAGGCAAAGGACCGTCACATTGCGAGAGAACTGGCGTTGCTGAGGGCGTCCAAACCCTACCCACCGATGGTATCCCATCTCGATGAGATCGATGAAGCAGCGATAGAGGAGGGGATCAGGAGGAAGTTCGAGGACCCTTCATCAGTCCCACATGACGGTGAGGTCGTGGCCCTCTCCGCTGCTAAGCCGTTTGAAACTCCTTCCGCCAGTGCGACGCCGTTGAACAAACCTGCCAGCCGTTCACCGAGAAAAACGTTGTTTAGGAGGAACAAGCCGGTTGTGAGGACTCCACCCCCCCGATGCAAGAACTGTGTGATCCTTGCTGCTGAGCTGAAGGTGGTGAAAGAGCTGCTGGAAGCCGAAATAGAACGGAGTGACGAACTAAAACAGTTGCATTCTTCAACCAGTCGAAAAAAGGCTCCTGGCCCCGCCCCCTCCACaggatcagccaatcagaagagACGTCGGtgagaaacagacagaagaTCTGGGCCCGTATCCCTAAAGATTCTGAGAATCCTCTCAGAGAGCTCCTAACTTAACCTAAAAATTCCTTGCCAGGGCCCGTATTCATAAAGAATCTAAGAATCCTCTCAGAAAACTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641573.1 lncRNA upstream 136354 35678806 ~ 35679539 (+) True LOC120572998
TU201762 lncRNA upstream 136740 35678849 ~ 35679153 (+) False LOC120572998
TU201722 lncRNA upstream 263951 35493204 ~ 35551942 (+) True G149184
TU201716 lncRNA upstream 355959 35459376 ~ 35459934 (+) True G149180
TU201703 lncRNA upstream 386850 35426249 ~ 35429043 (+) False G149172
XR_005641604.1 lncRNA downstream 3943 35824390 ~ 35825607 (+) True LOC120573030
TU201732 lncRNA downstream 14538 35834985 ~ 35880373 (+) True G149188
TU201740 lncRNA downstream 23467 35843914 ~ 35996612 (+) True G149191
TU201808 lncRNA downstream 63283 35883730 ~ 35931021 (+) True G149235
TU201778 lncRNA downstream 77665 35898112 ~ 36194441 (+) False G149212
XM_039822478.1 mRNA upstream 13960 35799725 ~ 35801933 (+) True LOC120572944
XM_039823253.1 mRNA upstream 140249 35653002 ~ 35675644 (+) True LOC120573495
XM_039823252.1 mRNA upstream 241625 35560450 ~ 35574268 (+) True LOC120573494
XM_039822452.1 mRNA upstream 340235 35467836 ~ 35475658 (+) True LOC120572927
XM_039822210.1 mRNA upstream 486673 35324383 ~ 35329220 (+) True LOC120572777
XM_039822343.1 mRNA downstream 296851 36117298 ~ 36130103 (+) True LOC120572849
XM_039822404.1 mRNA downstream 519184 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 550432 36370879 ~ 36401016 (+) True LOC120572637
XM_039822353.1 mRNA downstream 600388 36420835 ~ 36427296 (+) True LOC120572853
XM_039822350.1 mRNA downstream 624052 36444499 ~ 36453193 (+) True LOC120572851
TU201707 other upstream 386850 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 530159 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 530338 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 673407 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 687690 35122722 ~ 35128203 (+) True G149096
XR_005641500.1 other downstream 296851 36117298 ~ 36122718 (+) False LOC120572849
TU201730 other downstream 302259 36122706 ~ 36262372 (+) False G149187
TU201846 other downstream 519201 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 519201 36339648 ~ 36343478 (+) False LOC120572889
TU202320 other downstream 1116959 36937406 ~ 36938142 (+) True G149584

Expression Profile