RNA id: XM_039822416.1


Basic Information

Item Value
RNA id XM_039822416.1
length 827
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC120572900
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36651436 ~ 36657906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatgtgtgtgtgtatgtctctgtttgtgtgtgtatatgtgtgtgtgtgtgtgtgtgaggtttcaTAAACATCAAACAAGCTTTAATCCCACCAGTCTGTGTGAAGATCTTTCATTCGTCtcgtgttaaaaaaaaaagattattagtAAATCTAGTTTAGTTTCTGACTCAAGACAACAGATGGAACAGATAATCAGCAGAGGGGAGATCGGACTCAATCTGAGCGCTGCAGCTCCGACCTGCGGTCATCTGGAGATGGTGGACTGGTTCCCAcctcaacaacagcagcagttcCTGAATCTGACCAGCGGGGGGCGAGACACCagatcacacactcacacttcgTCCGTCCATCCTCtagtccctctcctcctctacagCGACACGcacttccctccctcctctccgtACAGCCGGCCAATCGGTGCACCCGCTGACCGGCAGGCCGACGCCCACTCCGACACGCGCGCCCGCGATCACGCCAACGGCGTCACCAGCCGGCCGGCAGTGAAGAAGCCTCTGAACGCCTTCATGCTCTACATGAAGGAGACGAGACACAAAGTGCTGCAGGagggacgagagagagagagcgccgcTGTTAACCGTATCCTGGGACGCAAGTGGCACGCTCTGTCGCGCTCCGAACAGTCCAAATACTACGATCTGGCCCAGAAGGAGAGACTGCTCCACACACAGCTTTACCCTGGATGGTCCGCCCGGGAAAACTACgggaagaggaagaggaagaggagccagCAGCCGACAGGAAGCTGCCCCACGTCGGGTTGAAAGACGaacgaaataaaagcctctatgGAAGCAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202179 lncRNA upstream 63954 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA upstream 63954 36585539 ~ 36587482 (+) False G149492
TU202175 lncRNA upstream 120242 36493053 ~ 36531194 (+) True G149489
XR_005641598.1 lncRNA upstream 169995 36481086 ~ 36481441 (+) True LOC120573024
TU201864 lncRNA upstream 183639 36465326 ~ 36467797 (+) False LOC120572806
TU202229 lncRNA downstream 2280 36660186 ~ 36662049 (+) True G149527
TU202219 lncRNA downstream 4325 36662231 ~ 36688498 (+) True G149524
TU202220 lncRNA downstream 18555 36676461 ~ 36688498 (+) False G149524
TU202221 lncRNA downstream 18555 36676461 ~ 36688498 (+) False G149524
TU202237 lncRNA downstream 19382 36677288 ~ 36702681 (+) True G149535
XM_039822171.1 mRNA upstream 5242 36637497 ~ 36646194 (+) True LOC120572753
XM_039822261.1 mRNA upstream 175194 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA upstream 175194 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA upstream 175194 36464496 ~ 36476242 (+) True LOC120572806
XM_039822350.1 mRNA upstream 198243 36444499 ~ 36453193 (+) True LOC120572851
XM_039821959.1 mRNA downstream 60580 36718486 ~ 36720358 (+) True LOC120572642
XM_039823028.1 mRNA downstream 439006 37096912 ~ 37101599 (+) True LOC120573341
XM_039821963.1 mRNA downstream 443670 37101576 ~ 37121087 (+) True LOC120572645
XM_039823029.1 mRNA downstream 468291 37126197 ~ 37145176 (+) True LOC120573342
XM_039823026.1 mRNA downstream 552154 37210060 ~ 37236516 (+) True LOC120573338
TU201846 other upstream 307858 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 307958 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 389064 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 399413 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 528718 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 279500 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 693169 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 910007 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1019089 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1019089 37676995 ~ 37681109 (+) False G149843

Expression Profile