RNA id: XM_039822478.1


Basic Information

Item Value
RNA id XM_039822478.1
length 2209
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC120572944
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35799725 ~ 35801933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caccactgtcaacactgtgacaaatccttcacaacatctggatatttaaagattcatcagagagttcacactggagagaatctacacatctgtgatcaatgtggggcagctttcacacaacagaGTCACCTAAAAAtccatcaacgcattcacactggagagaagccgtactggtgtgaacagtGTGGGAAAGGTTTTTCTCACAGTAGTAACCTAGAAATCCACcaacgtgttcacactggagagaagccgtacagctgtgatcaatgtggggcagctttcacacaacagaGTATCCTAAAAaaccatcaacgcattcacactggagagaagccgtactggtgtgaacagtGTGGGAAAAGTTTTACTCAGAGTAGTAACCTAGAAATCcaccgacgtgttcacactggagagaagccgtactggtgtgaacaatgtgggagaACGTTTTCTCAGAGTAGTAGCCTTAAATatcaccagcgcattcacactggagagaagccttactggtgtgaacaatgtgggaaaactttttctctgAGTGGTAGCCTTAAATatcaccagcgcattcacactgcctcGTGAACATGTTTTcagagccaagctgtttcctcctaCATGTATGTTATTGTGGCTACGACTACATATTACGTTCCTTTCCTTTGAAGGGTTAGACCTGTTAGAAGTGGGTCAAATGCTGTTTCCCCTGatgctgtgtgttttaatgatTAATTGCtgagaatattttctttttaaatgattattatttattttctgatgCTCATTAGCATTTTTCAGGGGCTTTGGATGCTCAAACTCATggcatattgcatattttcctcatattgtgcagccctagctttTACAATGTTATATTATTCTTCTGAGctgtatataaaacaaaaacagctccttataaataaaatatacacgTTACAGTCAGGTAGCCTTGTGTAGCACTTGACGTCCAGCCGTGTGCTGTAAGAGCAACAGCTGGTACTTTGGACAATTTGTTCTCTATTtgggcttttgtttttttgtacaacGCAGGAATTAGGGTCTGGCTGAAATGGGCTCGTGAAGGAATAGTGTAACAGGGCTCAGTTACTTTAACCTTGTTCCTAAAACCTGTGTTTTCCACTACAGTGTAGAGTCTCATATCCGCAGCTATAAATGTACCAATCACTGCTGTGATGTCTTTGGCCCTGTTTGAATCAGTTTGAAATTGTTGCCTAAATGCTGTGGGGATCGTTCTTCTTGTTTTCATCTAGTTCCAGTTATTGACACACTGAGGTGATGTCGGTGTAAATGAGTTGACATGTTTGTAGTATTCCCACTGGTGTAGCCTATTCTCATGTAGCAGATGTAACATACACCACTCTCTTGCCATCAGCCTCATAACTTACAGGGAAACCAGAGTGGCTCCAAACGCCAGAACTGTTGGTTATTAGAGGATCTTCTAATTCTGGTCtggtaatagtcacattaacgTTACTAGCCATATTGCAACGAGCTAGTTCAGCATAGCCTGCCTGACTGGAGTAGAGTGTTTTTCTTTGGGGGTGGGAGGGGCAGACAGCACGTTTCCTGTTACTTCGTTTGGGCTGCCTTGTTGAGTGCAGCGGCACTGAGAACATTATATTTCACACAATTTAAGCTCTTTCTTTTCTAAATGAAATAGGATTAGTCCAACGAAACGTTCAGTTTGTAATGCGCACATAATCGAAAGCCTCGTACCGAACGGTTCAATAAGAATACGtgtatcgttacacccctaTTTATTTGTGTTCAATGACTAAGAAAAGGAAACTAGAGATTgcatttctgaaaaaaatgcGGTGTGAATGTTGGATGCTGAAAGGCTGATGCTACAATGCATTGCTGGCTTGAATGTCAATGAAGGATAGATAGACTCACTTATATTGCCACATGTCAGTCCTGGTGAAAATAGCAATGTTCTCCCCTAACGTCCCCTAATACACGCCATGGTTCAGATAAAGGTTCTCTGACGTTCACGAAATTTGATTAGAACATAGTTCTCATCTTTAGGAACATGTATAAAAAGaattggatgttttttttcgcCTGAGAGGAAGTTAGTCATCTTGGATTTTGTTCGCTAATTTTTGCTCTGCGAACACATTTAAGGACTTTATTGTGCACAAAAACTCTCAAAACTTTGCAACCTTGTGGACACCTGGGTAGGCCT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641573.1 lncRNA upstream 120186 35678806 ~ 35679539 (+) True LOC120572998
TU201762 lncRNA upstream 120572 35678849 ~ 35679153 (+) False LOC120572998
TU201722 lncRNA upstream 247783 35493204 ~ 35551942 (+) True G149184
TU201716 lncRNA upstream 339791 35459376 ~ 35459934 (+) True G149180
TU201703 lncRNA upstream 370682 35426249 ~ 35429043 (+) False G149172
XR_005641604.1 lncRNA downstream 22457 35824390 ~ 35825607 (+) True LOC120573030
TU201732 lncRNA downstream 33052 35834985 ~ 35880373 (+) True G149188
TU201740 lncRNA downstream 41981 35843914 ~ 35996612 (+) True G149191
TU201808 lncRNA downstream 81797 35883730 ~ 35931021 (+) True G149235
TU201778 lncRNA downstream 96179 35898112 ~ 36194441 (+) False G149212
XM_039823253.1 mRNA upstream 124081 35653002 ~ 35675644 (+) True LOC120573495
XM_039823252.1 mRNA upstream 225457 35560450 ~ 35574268 (+) True LOC120573494
XM_039822452.1 mRNA upstream 324067 35467836 ~ 35475658 (+) True LOC120572927
XM_039822210.1 mRNA upstream 470505 35324383 ~ 35329220 (+) True LOC120572777
XM_039822229.1 mRNA upstream 484306 35290137 ~ 35315419 (+) False LOC120572790
XM_039822374.1 mRNA downstream 13960 35815893 ~ 35820447 (+) True LOC120572867
XM_039822343.1 mRNA downstream 315365 36117298 ~ 36130103 (+) True LOC120572849
XM_039822404.1 mRNA downstream 537698 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 568946 36370879 ~ 36401016 (+) True LOC120572637
XM_039822353.1 mRNA downstream 618902 36420835 ~ 36427296 (+) True LOC120572853
TU201707 other upstream 370682 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 513991 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 514170 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 657239 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 671522 35122722 ~ 35128203 (+) True G149096
XR_005641500.1 other downstream 315365 36117298 ~ 36122718 (+) False LOC120572849
TU201730 other downstream 320773 36122706 ~ 36262372 (+) False G149187
TU201846 other downstream 537715 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 537715 36339648 ~ 36343478 (+) False LOC120572889
TU202320 other downstream 1135473 36937406 ~ 36938142 (+) True G149584

Expression Profile