RNA id: XM_039822498.1


Basic Information

Item Value
RNA id XM_039822498.1
length 2112
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120573066
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 21065168 ~ 21070082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTAAACACCACATCCTGAACGTTCTGCATCTGTTCTGCATGAGGACGATCAGGAGCTCAACATGACAACCCAAACTACAGTAACAATTTTGGCGCTTGATGAGCCGTTTAAGGAGCAGTTCAATTGCTGCATCTGTCTGGACATCTACACCAAGCCTGCCACCATCCCATGTGGACACACCTTCTGCCTGGACTGCATCGACGGCTTCTGGGACACTAAGACCAAGGCTGAGTGTCCGCTGTGCAAAGAGACATTCAGAAAGCGTCCACAACTCAGGATCAACCAAGGATATGAACAAATCATTGAATTATATAAAAGGTCTCAGGAGGAGAATGTTGACGGTGTGGGAAGCAGGAAAACTTCCCCAATCCCACTTTTCGAGCCTGAAGAGATTCCCTGTGACATCTGCCATGGAGACAAGTCTCCATCAGTCAAGTCTCCATCAGTCAAGTCGTGCCTCGTGTGCCAGGCGTCTTATTGTGAACTTCACCTCACACCACACCTGAGGGATCCAGCGCTGCACAGACACCAACTTACTGATCCGGCCACCTTCGCCACCAGTCACCTCTGCAGAAAGCACCATGAGCCGCTGACAATGTTCTGCAAGAAGGACCATAAGCCTGTTTGTGTTCAATGCACAGAGAgggcacacaaacaccacaagaCCGTCCCCATGGAGGAGGAGAACAAGAGGGTCAAGATTCGTTTGAGAGAGATGATATCCACCATTCAACCAATGATCCACACCAGACTGAGAAAAGTGAAGGAAATACAAAATTCTGTGTCTGTAAGCAGAGAAATCACAGAGAGGGAAATAGAGAGCAGCGCTCAGATCTGCAGCATGCTGATAAGCGCCATCGAGAGACAGCATGCCGGGCTGGTCGAGGAGCTGGAGAAGAGGCAGCAAGAAGCTGAGAGGAGAGCTGAGGAGCTGTTccaggagctggaggaggaacTCAATGATCTGCAGATGAGGAGCAGCGAGCTGCAGCACCTGGAGCACACTCGGAACCCTGTTCACCTCGTACAGAGTTTCCCGTCTCTAAGACGACTCCCTCATACTAGAGAGTGGTCTGAGGTTGCAGTCCACTCAGATAACTGCATGGGGGTGGTGATGAGAGCCGTCTCCAAGCTTGGAGACATCTGCCAGGAACTTGCCAACAAACTGTCTGCAGAAGAAACAGACAAGATGGATCAATATGCAGTCAATGTCACTGTGGATCCTGAGACTGCTTCAGGCTGGCTGGTCCTGTCTCCAGACAGAAAGAAGGTGAGAGTCAGCAGCAAGAAGAACAATTCTCCACTCCCAGACAGTCCTCAGCGCTTTGACTCCTGCGTCTGTGTTTTGGGGAAACAAAGCTTTGCATCTGGAAGACGCTACTGGGTTGTTGAGGTTGGGGATAAAACAGACTGGGATCTTGGCGTGGCCAGGGAGTCCATCAACAGGAAGGGGGCCATCACGGTGCGTCCCGACAGCGGTTACTGGGCGATCTGCCGGAGGAAAGGTAGCAGTCTCAGCGCCTGTGCCGGTCCCTCCGTCGCCCTCCACCTCCAGGAAACCCccaagaaagtgggcgtgttcCTGGACTACGAGGAAGGGTCGGTGTCCTTCTACGACGCTGAAGGAAAGACCCACATTTACACTTACAGCGGGTGTGACTTCACTGAGCTCCTCTACCCGTACTTTAACCCCTGTGTTCAAGAAGATGGGAAGAACACCGCCCCGCTGATTATCTGTCCTGTTGACGGAGGAGTCAGGGAATGACGGGACATAACCCTTGAGTCAGCTGCATGATGTGTCATAAGAAAGGATGATGCTaactgatgtaaaaaaaaatatatatatattatatatattaggcCTATATTTATTGTACTGCAATAATATTTGACCAACACTGGCCTGCAACAGGCCAACATCCATGAgtaaagatttttattttattattcaaaaTAATCTTTACAAAATTATATCGCACTTGtacataaatgtaaataaaatgtgtaaatgttgtTGAATGCACTGCAAAAGGTCATTCCATAGCCTAAATGGGCAATGGAGAACTTAAAATTgtgaaactgaaaataaaagttaCGTATTGAAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195809 lncRNA downstream 7369 21055824 ~ 21057799 (-) True G145106
TU195827 lncRNA downstream 87152 20976655 ~ 20978016 (-) True G145112
TU195755 lncRNA downstream 133447 20931066 ~ 20931721 (-) True G145076
TU195688 lncRNA downstream 198080 20864825 ~ 20867088 (-) False nop10
TU195686 lncRNA downstream 219915 20843574 ~ 20845253 (-) True G145023
TU195810 lncRNA upstream 30067 21100149 ~ 21100806 (-) False G145106
TU195863 lncRNA upstream 88820 21158902 ~ 21161476 (-) True G145141
TU195936 lncRNA upstream 361643 21431725 ~ 21437860 (-) False si:dkey-172j4.3
TU195944 lncRNA upstream 405301 21475383 ~ 21479973 (-) True G145213
TU196111 lncRNA upstream 972344 22042426 ~ 22042693 (-) True G145330
XM_039822497.1 mRNA downstream 14880 21045556 ~ 21050288 (-) True LOC120573065
XM_039821558.1 mRNA downstream 95757 20963708 ~ 20969411 (-) False si:dkeyp-74b6.2
XM_039821557.1 mRNA downstream 95773 20963708 ~ 20969395 (-) True si:dkeyp-74b6.2
XM_039822648.1 mRNA downstream 118186 20934518 ~ 20946982 (-) True khnyn
XM_039822682.1 mRNA downstream 135609 20906455 ~ 20929559 (-) True LOC120573168
XM_039821423.1 mRNA upstream 50119 21120201 ~ 21127069 (-) True LOC120572218
XM_039821863.1 mRNA upstream 61486 21131568 ~ 21132550 (-) True LOC120572532
XM_039822776.1 mRNA upstream 97417 21167499 ~ 21184457 (-) True rab39bb
XM_039822109.1 mRNA upstream 281160 21351242 ~ 21438456 (-) False si:dkey-172j4.3
XM_039822111.1 mRNA upstream 281160 21351242 ~ 21437915 (-) False si:dkey-172j4.3
TU195751 other downstream 147993 20915641 ~ 20917175 (-) False LOC120573168
XR_005641682.1 other downstream 201279 20827283 ~ 20863889 (-) False LOC120573300
TU195325 other downstream 1267638 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 1399376 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 1711876 19350510 ~ 19353292 (-) False LOC120572670
TU195934 other upstream 293900 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 312184 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 333773 21403855 ~ 21434195 (-) True G145209
TU196042 other upstream 814673 21884755 ~ 21890072 (-) False ccnb3
TU196043 other upstream 814673 21884755 ~ 21890072 (-) False ccnb3

Expression Profile