RNA id: XM_039822623.1


Basic Information

Item Value
RNA id XM_039822623.1
length 3774
RNA type mRNA
GC content 0.47
exon number 11
gene id rbpjb
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17764186 ~ 17821078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTtcgctcactctctctctctctattgctGCTACCCGCCGCCTCccctttttctctgtcttcctcacCCACCCCCTTTCTCTCCGTCTCCCTCGTCCCTACACCTCCAGTCTGCTTCTGTTGTCTCGGCGGATTGTTGGACTGTGGGAGAGAAAGGATATCGCGAGTATTGGAGTTTTGGTGAGAGTTTGTGGAAGATGGCGCCTGTTGTGACAGGGAAGTTCGGGGAGCGCCCTCAGCCACTGCGCCTAACGAGAGAAGCGATGAGGAATTACCTGAAGGAGCGAGGTGACCAAACTGTCATGATCCTGCACGCAAAAGTTGCACAGAAATCCTATGGCAATGAGAAAAGGTTCTTCTGCCCTCCTCCCTGCGTTTACCTGATGGGTAGTGGctggaagaaaaagaaggaacaGATGGAGCGAGACGGCTGCTCCGAGCAGGAGTCGCAGCCTTGTGCCTTCATCGGCATCGGCAACAGCGACCAAGAAATGCAACAGCTTAACTTAGAGGGAaagAATTATTGCACTGCCAAAACCTTGTACATATCCGACTCCGACAAGAGAAAGCACTTCATGTTGTCTGTCAAGATGTTCTACGGCAACAGCACTGACATCGGTGTCTTCCTCAGCAAGAGGATCAAAGTCATCTCCAAGCCCTCCAAAAAGAAGCAGTCCCTCAAAAACGCTGACTTGTGCATTGCATCAGGGACCAAGGTGGCACTGTTCAACCGGCTTCGGTCCCAAACGGTCAGCACGCGCTATCTACACGTGGAGGGCGGCAACTTTCACGCCAGCTCCCAGCAGTGGGGCGCCTTTTACATCCACCTGTTGGATGACGAGGAGTCAGAAGGAGAAGAGTTCACTGTGAGAGACGGTTACATCCACTACGGCCAGACAGTCAAGCTGGTTTGCTCTGTCACTGGCATGGCCCTGCCCAGACTgATCATCCGTAAAGTGGACAAGCAGACTGCGCTGCTGGACGCCGATGACCCCGTCTCCCAGCTCCACAAGTGTGCCTTCTACCTGAAGGACACAGAACGCATGTACCTGTGCCTTTCCCAAGAAAGGATCATCCAGTTTCAAGCCACTCCATGCCCAAAGGAACCAAACAAGGAGATGATCAACGACGGCGCCTCCTGGACAATCATCAGCACAGACAAGGCTGAATACACTTTCTACGAGGGCATGGGCCCCGTCCACTCGCCTGTCACCCCTGTGCCTGTGGTAGAGAGCTTACAGCTAAACGGTGGAGGCGATGTCGCCATGCTGGAGCTGACAGGACAGAACTTCACTCCAAATCTGCGGGTCTGGTTCGGAGACGTTGAGGCCGAGACCATGTACAGGTGTGCAGAGAGCATGCTGTGCGTGGTGCCCGACATCTCCGCCTTCCGCGAGGGCTGGCGCTGGGTGCGGCAGCCCGTCCAGGTGCCCGTCACGTTGGTTAGGAACGACGGCATCATCTATTCCACCACACTGACCTTCACCTACACGCCGGAGCCCGGGCCGCGGCCACACTGCAGTGCCGCCGGGGCCATCCTGCGGGCTGGAAACTCCAGCCTGCTCAGCAACAACAGCCAGGAGGCCGGCCCCGGCATCTACGGCCCCAACAGCACCTCCAACGCAGGAGTTacatcctcatcctccaccGCCGCAGCTGTGGTCTCCTAACGCACACAGGGGGCCACTCAATACTATATGCCTTGAGAGCAAATGTACCACAAGGTATATAACGACTATGGGAAATAATAACAAAGACTGACTCACTCTAAAGTGCTGCGTATTAATTTTGGATACAAAGAAGCTGAAATGGAAAAATTGGTGGGAGAAAGTAGCAAACGCAGGGGGAAACTGAAGGAGTGACATCACAACGCTGTCAGCTAACGGGAATAAGCGAGAAGTGCTCCTTGAAACGCCCCCTCTCCTGTGGTTACTGTCGGGACCTGCCTATCCAGTTCTGGTGTTTTGGAATGAGTGAAATTCCTGCAGGCTCAGAGCACCAGCACCTTTCTACGGTTGTTAGAATGGAAACCACCACAACAATACATCCACCGTGTACAAACAAATCTCTTGAAAGGAAAGTATATTTTTGCTCCCAACCCCCTCCCACCACTTGTTTTAtaattattccttttttttattttgtgttattttgcaTCTATTTGTGGTTTCCTAAAGGGGGCTGGATGTATTGTTGTTGGAGGGAGCGCAAGGATGCAATGGGACACACCTAAAACGTGACGATAACATAGTTTTTATGGACCAAGGATCTTGTATAAGCTTTAGTAAAGGTACATTTTTCTCCATACCTTTTTTGTATTAAACATATAGTACACTTTTGTTACCAAATAGTTTCTATTCTTCCTTTGAGCTTGGGCTTTGTTTTCCCCCTTTGAGGTCCAAAATCACAACCTGTATGTTATTGCGACCTTACTACAAATGCCTGCTTTGTCAGTCCTTTGgattggactttttttttttttttttgatactcTTGCTTCTTCtgttgggaaaaaaagaaatctgaagTTTGGGTTGTTTATTTGCTTAAGCGAaggttaattattattattattttttttaatagggGAATAACCTCAGAGGGCCTATGTTTTCTCATTTGGTTTTTATgaagtctttaaaaagaaaagctttAAGCAACGCCTCTGCCTTGCCTGCAATACTCTATGTACGCTATGTCTCCTTTGGAAAGTATACACATCAGTACATCTCAACATGGAGCCATAGCAACATTTGCAGAATACATGAAAAACTAGACTTCCGTAGTTACAAAAACAAGTCAGTTTgtcattttcaaactaatgtaaCAAGCGTAGTCATTGACTTAAAaggatagccttagtactgtaTATTCTTCCTGTGTACACAGTCCAACCGCTCACATATCTAATATCCTGTATCTGTTGCTCTATTGGTCACTGTTAACGTATCATAATGTAGTCAAACTTAAAACTGCAGCTAGCTAGATTTCTTCCAATGTGTGCTGTAGTTGTGGTGGCATTTAACTCCAGTGGTTTTCCAAAAAGACGGACACTTTTCAATTTGATGTGGCCTTACCGAGAACTTCAATTACAAAAAAAGTACTTCACCTTTTCTTATCTGCTTGTTTACTCACCTCTGAAGAACCTGTGCATAGCACAAAAACAAGCTAATGCCTCGCTTCTTGCCACAGGAGCTCTGCTGTTTTGAGCTCATTGCCGCGGCTCCAGAACCACCTTGTCATGCAAAGTAGCCTTCTGAAGGATCTGTCAGCCTTTGGCTTCTTTTGGGTGTTCCAAGTACAATAAGCCCGTTTTTTTATTCTCATGCGGTGCCCAGCACCTTTTCACTTTTGGTACAATGTCTCACGAGCGCTGTAAGCTCTTTTCAgccttcctttaaaaaaaaaagaaaaaaagaaaaaaaaaatctcctgtGGTTTATTATCTTTGCAGAAACAAGCCTGTGTACATACTCACTGTCCGAGTAGTTGCActcatcttcatcatctgtGTCCATGGCGACCGCGTCTCCTGTAGGAGTATAAAGGCCTTCTAAATGTGTATTATTGAAGATGTGCATTTCCACAACAGAACAGCAATATTGTACAGGTCATTTCATCGTTTTTGTCTGCCTGAGCACTAGTTCACCAGCCAgcaaatatgtgtatgtgtgtgtgtgactgtcctATGTAGTTGCTGTAATGGAATATTGAGTCAGACTCGCTCCATTTCAAAGTGTGTTCCAACTgctctcccaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194173 lncRNA downstream 481 17762380 ~ 17763705 (-) True G143898
XR_005641723.1 lncRNA downstream 79233 17682075 ~ 17684953 (-) False LOC120573415
XR_005641722.1 lncRNA downstream 79233 17682075 ~ 17684953 (-) False LOC120573415
XR_005641724.1 lncRNA downstream 79325 17682075 ~ 17684861 (-) True LOC120573415
TU194119 lncRNA downstream 516553 17247376 ~ 17247633 (-) True G143852
TU194197 lncRNA upstream 31321 17852399 ~ 17853814 (-) False smim20
TU194329 lncRNA upstream 66200 17887278 ~ 17889652 (-) True G144013
TU194348 lncRNA upstream 152821 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 171067 17992145 ~ 18002471 (-) True LOC120572704
TU194367 lncRNA upstream 195171 18016249 ~ 18019306 (-) True G144037
XM_039821851.1 mRNA downstream 11171 17734332 ~ 17753015 (-) True tbc1d19
XM_039823136.1 mRNA downstream 33787 17687074 ~ 17730399 (-) False stim2b
XM_039823135.1 mRNA downstream 33788 17687074 ~ 17730398 (-) True stim2b
XM_039821850.1 mRNA downstream 514554 17230599 ~ 17249632 (-) True LOC120572513
XM_039822851.1 mRNA downstream 538654 17121043 ~ 17225532 (-) False pcdh7b
XM_039823395.1 mRNA upstream 31293 17852371 ~ 17853837 (-) True smim20
XM_039823201.1 mRNA upstream 43753 17864831 ~ 17870686 (-) True si:dkey-19b23.8
XM_039823435.1 mRNA upstream 85022 17906100 ~ 17949655 (-) False chd3
XM_039823436.1 mRNA upstream 90910 17911988 ~ 17949657 (-) False chd3
XM_039823434.1 mRNA upstream 90910 17911988 ~ 17949657 (-) False chd3
TU194183 other downstream 11197 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 514632 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 514632 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1720867 16019657 ~ 16043319 (-) True acap1
unassigned_transcript_699 other downstream 2409851 15354247 ~ 15354335 (-) True trnar-ucu_16
TU194343 other upstream 239114 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 292774 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 774024 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 873621 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 875018 18696096 ~ 18696169 (-) True trnan-guu_12

Expression Profile