RNA id: XR_005641649.1


Basic Information

Item Value
RNA id XR_005641649.1
length 1811
RNA type transcript
GC content 0.54
exon number 12
gene id rbpjb
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17764186 ~ 17821078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTtcgctcactctctctctctctattgctGCTACCCGCCGCCTCccctttttctctgtcttcctcacCCACCCCCTTTCTCTCCGTCTCCCTCGTCCCTACACCTCCAGTCTGCTTCTGTTGTCTCGGCGGATTGTTGGACTGTGGGAGAGAAAGGATATCGCGAGTATTGGAGTTTTGGTGAGAGTTTGTGGAAGATGGCGCCTGTTGTGACAGGGAAGTTCGGGGAGCGCCCTCAGCCACTGCGCCTAACGAGAGAAGCGATGAGGAATTACCTGAAGGAGCGAGGTGACCAAACTGTCATGATCCTGCACGCAAAAGTTGCACAGAAATCCTATGGCAATGAGAAAAGGTTCTTCTGCCCTCCTCCCTGCGTTTACCTGATGGGTAGTGGctggaagaaaaagaaggaacaGATGGAGCGAGACGGCTGCTCCGAGCAGGAGTCGCAGCCTTGTGCCTTCATCGGCATCGGCAACAGCGACCAAGAAATGCAACAGCTTAACTTAGAGGGAaagAATTATTGCACTGCCAAAACCTTGTACATATCCGACTCCGACAAGAGAAAGCACTTCATGTTGTCTGTCAAGATGTTCTACGGCAACAGCACTGACATCGGTGTCTTCCTCAGCAAGAGGATCAAAGTCATCTCCAAGCCCTCCAAAAAGAAGCAGTCCCTCAAAAACGCTGACTTGTGCATTGCATCAGGGACCAAGGTGGCACTGTTCAACCGGCTTCGGTCCCAAACGGTCAGCACGCGCTATCTACACGTGGAGGGCGGCAACTTTCACGCCAGCTCCCAGCAGTGGGGCGCCTTTTACATCCACCTGTTGGATGACGAGGAGTCAGAAGGAGAAGAGTTCACTGTGAGAGACGGTTACATCCACTACGGCCAGACAGTCAAGCTGGTTTGCTCTGTCACTGGCATGGCCCTGCCCAGACTgATCATCCGTAAAGTGGACAAGCAGACTGCGCTGCTGGACGCCGATGACCCCGTCTCCCAGCTCCACAAGTGTGCCTTCTACCTGAAGGACACAGAACGCATGTACCTGTGCCTTTCCCAAGAAAGGATCATCCAGTTTCAAGCCACTCCATGCCCAAAGGAACCAAACAAGGAGATGATCAACGACGGCGCCTCCTGGACAATCATCAGCACAGACAAGGCTGAATACACTTTCTACGAGGGCATGGGCCCCGTCCACTCGCCTGTCACCCCTGTGCCTGTGGTAGAGAGCTTACAGCTAAACGGTGGAGGCGATGTCGCCATGCTGGAGCTGACAGGACAGAACTTCACTCCAAATCTGCGGGTCTGGTTCGGAGACGTTGAGGCCGAGACCATGTACAGgccagagtagctggagagATTAGCTGaagccaaaaactgaaaaggaaagcTAAGAGTGGGGATCTTGCGGTTGTTTTGCAAAGAAAATTGAGAAaagtgcacaggaggaagagaaggagggaaatgaagaaggcAGTAAAGTGCAGAGACCAGgagggtcagagcaggagaagaccacagaaggagatggagaaataagtgaaggagaagaggaaaaggaagaatggactgtgagggatgaagaggaggctgcagattcagagagagggacagaggcagggagcgatcaggaggaggcagaggaagatgacagggaggaagagggtaGGCCTGCAACTCCCTGGACCACATGGTGTGCAGAGAGCATGCTGTGCGTGGTGCCCGACATCTCCGCCTTCCGCGAGGGCTGGCGCTGGGTGCGGCAGCCCGTCCAGGTGCCCGTCACGTTGGTTAGGAACGACGGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194173 lncRNA downstream 2795 17762380 ~ 17763705 (-) True G143898
XR_005641723.1 lncRNA downstream 81547 17682075 ~ 17684953 (-) False LOC120573415
XR_005641722.1 lncRNA downstream 81547 17682075 ~ 17684953 (-) False LOC120573415
XR_005641724.1 lncRNA downstream 81639 17682075 ~ 17684861 (-) True LOC120573415
TU194119 lncRNA downstream 518867 17247376 ~ 17247633 (-) True G143852
TU194197 lncRNA upstream 31322 17852399 ~ 17853814 (-) False smim20
TU194329 lncRNA upstream 66201 17887278 ~ 17889652 (-) True G144013
TU194348 lncRNA upstream 152822 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 171068 17992145 ~ 18002471 (-) True LOC120572704
TU194367 lncRNA upstream 195172 18016249 ~ 18019306 (-) True G144037
XM_039821851.1 mRNA downstream 13485 17734332 ~ 17753015 (-) True tbc1d19
XM_039823136.1 mRNA downstream 36101 17687074 ~ 17730399 (-) False stim2b
XM_039823135.1 mRNA downstream 36102 17687074 ~ 17730398 (-) True stim2b
XM_039821850.1 mRNA downstream 516868 17230599 ~ 17249632 (-) True LOC120572513
XM_039822851.1 mRNA downstream 540968 17121043 ~ 17225532 (-) False pcdh7b
XM_039823395.1 mRNA upstream 31294 17852371 ~ 17853837 (-) True smim20
XM_039823201.1 mRNA upstream 43754 17864831 ~ 17870686 (-) True si:dkey-19b23.8
XM_039823435.1 mRNA upstream 85023 17906100 ~ 17949655 (-) False chd3
XM_039823436.1 mRNA upstream 90911 17911988 ~ 17949657 (-) False chd3
XM_039823434.1 mRNA upstream 90911 17911988 ~ 17949657 (-) False chd3
TU194183 other downstream 13511 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 516946 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 516946 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1723181 16019657 ~ 16043319 (-) True acap1
unassigned_transcript_699 other downstream 2412165 15354247 ~ 15354335 (-) True trnar-ucu_16
TU194343 other upstream 239115 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 292775 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 774025 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 873622 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 875019 18696096 ~ 18696169 (-) True trnan-guu_12

Expression Profile