RNA id: XM_039822678.1


Basic Information

Item Value
RNA id XM_039822678.1
length 1083
RNA type mRNA
GC content 0.60
exon number 5
gene id zgc:153012
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37888160 ~ 37907366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtctctgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtatctgaggATGAGTGGAGGTAAAAAGAGGAGTGGCTTCCAGATCACCAGTGTGACGTcagacttcaaccaatcagctgcGAGCGTGTCTCAGGGCAGCTCCTCCCAGCCGACCACACCCTCTCCGAAGAGGAAGTTCGGCTCCCATGATGCAACGGGGCAGGGGTCCCGGTTCCGGGTGGTCCGGCTGGCCGTGGGCGCGGCCAGCGGGCGCGGCGAGACGACTCGGCGCGGCCGCTGGACCTGCACGGACTTCATGGAGCCGCAGGACGGCTTCAGGCGCGTCATGGACTCCATGAGACACGCCCACTCGCTGGAGTCCCTGGAGCTGATTGGCCGGGACGCAGACAGGGGCGGGGCCTACTCCCAGGAGCCAATCAGAGGCGGAGTCTACTCCCAGGATCCAATCAGAGGCAGGGTGGGGCATGTTCTGCAGAGTGGGCCGTCCTCTCCGACCCACCCGGGGCCAAACGTCCGTATCCTGGCAGCGCCGGGGTTAGACTCCGCCCCTCCCCCGCCATCGCCACGCCCACGAAACGTCCCTCCGCCTCTACGGCTGGACGTGGACTCTGCAGGACGGtCTGTCCTCAGGCTGTCTCACTCTCAGCCCAGCTCCCCCCCTGCCGGGCCGTACCATCCCACTCTGACCCCCAGTCACACTCCAGCTGCCTTCAGTCTGGACCAGACCTTCTTCAACCTGCCAGGGGACGACAGTAGTTCCAGTAACAGCCTGATTGCCATCGACAACAAAATTGAACAGGCCATGGACCTGGTGAAGAGTCACCTGATGCTGGCGGTCCGAGAGGAGGTGGAGCTTCTCAGGGAACAAATCAGAGATCTGCAGGAGAAGAACCAACAGCTGCAGAGAGAAAACCACATCCTGAGAACtctaacacacaacacacacaatctacACAAGCTGCACAACACATGACACGCACaagctacacaacacacacaacacccacaatctacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641653.1 lncRNA upstream 623 37885677 ~ 37887539 (+) True LOC120573164
XR_005641652.1 lncRNA upstream 623 37885689 ~ 37887539 (+) False LOC120573164
TU202732 lncRNA upstream 24461 37863184 ~ 37863701 (+) True G149870
TU202733 lncRNA upstream 24461 37863428 ~ 37863701 (+) False G149870
TU202702 lncRNA upstream 36281 37803093 ~ 37851881 (+) True G149853
TU202758 lncRNA downstream 52950 37959920 ~ 38028577 (+) True G149878
TU202772 lncRNA downstream 68370 37975340 ~ 38008410 (+) False G149884
TU202775 lncRNA downstream 68370 37975340 ~ 38008410 (+) True G149884
TU202797 lncRNA downstream 234894 38141864 ~ 38143226 (+) True G149899
TU202800 lncRNA downstream 245252 38152222 ~ 38155353 (+) True G149902
XM_039823531.1 mRNA upstream 4826 37862170 ~ 37883336 (+) True mogat3a
XM_039823161.1 mRNA upstream 49126 37837985 ~ 37839036 (+) True LOC120573434
XM_039822926.1 mRNA upstream 255575 37613778 ~ 37632587 (+) True eno3
XM_039822679.1 mRNA downstream 4249 37911219 ~ 37952036 (+) True LOC120573166
XM_039822681.1 mRNA downstream 4249 37911219 ~ 37952036 (+) False LOC120573166
XM_039822680.1 mRNA downstream 4249 37911219 ~ 37950099 (+) False LOC120573166
XM_039823124.1 mRNA downstream 128845 38035815 ~ 38063462 (+) True eif4e2rs1
XM_039823126.1 mRNA downstream 152053 38059023 ~ 38063462 (+) False eif4e2rs1
TU202708 other upstream 39586 37843221 ~ 37848576 (+) False G149853
TU202698 other upstream 73283 37803093 ~ 37814879 (+) False G149853
TU202665 other upstream 207053 37676995 ~ 37681109 (+) True G149843
TU202808 other downstream 357467 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other downstream 357467 38264437 ~ 38351833 (+) False LOC120573406
TU202810 other downstream 357467 38264437 ~ 38351833 (+) False LOC120573406
TU202813 other downstream 357467 38264437 ~ 38351833 (+) False LOC120573406
TU202806 other downstream 440594 38347564 ~ 38351833 (+) False LOC120573406

Expression Profile