RNA id: XM_039822701.1


Basic Information

Item Value
RNA id XM_039822701.1
length 5455
RNA type mRNA
GC content 0.49
exon number 27
gene id sorcs2
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1018258 ~ 1429717 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgtctctctcggcTTACAGTGTACACCTATCTATCTTCCACAAGCATCAGcagtctctccatctctctccgcGATACTGAGCGCTACTACGGCGCAAAACATGGCATCTCTGCGCCCCGAAGAGCCGCTCTCCGCCGGCGCGCACCTCTGCGTCTTTCTGCTGATCGCCTCGGCCTGGATGGCACTGCCGGGACCCGTGCGCTGTGACAGCGGGGCTTTAACCCGTCGCGGCGGGGAGGACCGTACGTTTGACACGGGCGGCCGAGACGGAGGCTCCCCGCCGGGCTTACCAAAGGACGGCGACGAGGGAGCCGGCGGAGCGGAGAGCTCGCCCCGCTTCAGGAGAGCGCTGTCCCGGGAAAAACAAATGTCCCTGCTCAGCAGCTCCTTCGTGCTCAAAGGGGATGCGACCCACAACCAGGCGATGGTCCACTGGACAGGAGAGAACAGCAGCGTCATCCTGATCCTGACCAAGTATTACCACGCGGACTCCACCAAGGTACTGGAGAGCTCACTGTGGAGATCTTCTGACTATGGCACCACCTACACCAAACTCAACCTAATGCCAGGGACGACCATCGTGGTGACCAGCTTTTATATCTGCCCgaccaacaaaaaaaaggtaGTGCTGGTTGGGTCATCCATAAATGAAAGGGATCAAATGCTGTTCATCAGCACAGATGAAGGTTCTTCCTTCCAGCGACAGTCCATCTCCTTCACCCCGGACACGCTCATATTCCACCCTAAGGAAGAAGACAAGCTCCTGGCCTACTGCAAGGAGGGCAGGCTCTTTGCTTCTACAGACCTGGGCCGCAAGTGGACTTTGCTTCAGGAGCGGGTGACCAAGGACAAAGTTTTCTGgtcagtatctggtgtggaTGTGGACCCTGATCTGGTACACATGGAAATGCAGGATACGAGTGGAGGTTACCTGTATGTTACCTGTCTCATCCAGAACTGTTCGGACAAAATGGTGACGGCTCAGTTTCTTGGCAAAATCGACCACAACTCGCTGCTAGTGCAGGACGACTACGTTTTTGTCAAGGTCACCACAGGGAATCGCACCAAGCACTTTGTGTCGTATCGGCGCAATGAGTTTGTCCAGATGAAGTTTCCCAAGTACGCCTTGCCAAAGGATGTTCAGATAGTGAGTACGGATGATAACCAGGTCTTCCTCGCGCTCCAGGAGTGGTACCAGTCCGACACATATAACCTGTACCAGTCCGACCCGCAGGGTGTCTACTACTCCATCGTCCTGGAAAATGTGCGCAGCACCAAGCAGCCAGAGGAGAATGTCCTCATCGACGTACTGGAGGTGCGTGGAATCAGAGGAGTCTTCCTGGCCAATCAGAAGATCGATGGCAAAGTGACAACTCTCATCACCTATAACAAAGGCCAAAACTGGGAAGCCTTGGCCCCACCTACCACTGACATGAATGGCAAGCCCATCAGCTGCAAAGCGCCCCACTGTCacctccatctccacctccgCTGGGCAGACAACCCCTACGTGTCCGGGACTGTCCACACCAAAGACTCTGCTCCAGGTCTCATCATGGGTGCTGGTAACCTTGGCTCCAAACTAGTAGAGTATAAGGAAGAGATGTACATAACTTCAGACTGCGGGAAGACGTGGAGACAGGTTTTCGAGGAGGAGCATCACATCCTGTACCTGGACCATGGTGGGGTCATTGTTGCCATCAAGGACACCTCTATTCCACTCAAGATACTCAAATTTAGTATTGATGAAGGACGGACTTGGACGGTTCACAACTTTACCAGCACCTCTGTGTTCGTCGACGGACTCTTAAGTGAGCCAGGAGACGAGACCCTGGTTATGACTGTGTTTGGCCACATCAGCTACAGGTCAGACTGGGAGTTAGTCAAAGTGGACTTCAGGCAGTCTTTCCCCCGTCAGTGTACTGAGTCTGACTATGTGTCCTGGCAGCTCacagacctgcagGGAGAGAAGTGCATTATGGGCCAGGAAAGGAGTTTCCGGAAAAGGAAGGACACAGCGTTCTGTATCAAAGGAAAAAGCTACACATCAGCTCTCACCACCAAACCCTGCCAATGCACCGAGCAAGACTTCAACTGTGACTATGGTTTTGAACGTTCTCACACGGACGGCAATCACTGCTTTGCTGACTTCTGGCACGATCTAGATTCACCACCCGAAGACTGCCATCTAGGAAAAACCTACGAGTCCAGCACTGGCTACAGGAAGGTGATATCTAACATGTGTGAAGGGGGGCTAAACAAGCAGCAGAGCGCCACACAGCACAACTGCCCTCTGCTGCCTCCTAAAGGACTCCAGGTCAGCATCAAAGGGCAGATGTTGGCTGTGGCGCCTGGTGATGACATCACATTTATTGTCCACCAGGAACAGGGTGACACCAGCAGCACCAAGTACCAGGTGGACCTCGGCGATGGGGTTCGGGCTATCTACCAGAACCTAACAGTGACAGATGAGCCTATCCAGCATCGCTACAAAAATCCAGGCGTTTACAAGGTCACGGTGAAGGCTGAGAACACAGCAGGGCACGACGAGGCCACCATGTACATCCAGGTGACAGCCCCTCTACAGGAAGTGCACCTGGAAGTGGCTCCCATTACTGGAAGAAACCATGAGGTCAATCTGACTGCCATAGTTCTTCCCACTGAGGCAAACCTGTCTGTCTTCTACTGGTGGATAGGAGACAACCTGCAGCCTACGCTGACTCTGGAGAACAGCCTTCTGACCAGTTTCCCAGAGACAGGAGAGGTTTCAGTCACTGTCCAGGCTTCTAATGGCCGATCTATGGTGCAGGATACCAGGACAGTTCGAGTCTACGATAACTTCCAGGTCATCCGTCTGAGTTTCAGCACGAACCTGGACCGCTTCAACCCAAACATCCCAGAGTGGAGAGAGGACATTGGCCAAATGGTCACTAAAATACTTACTAAGACCACAGGTGTCCCGCTGGAGTCCCTTCTTACGGTGGTGAAGCCGGGCCTCCCCACTACTGCTGACCTGTACATCCTCCCACTGTACAGCAATCCAGCCAAGAGGAGCATGTTAGTAGATAAGCGTATTCCAGCCATCATACAAGCCTTAAATAGCAACAATGTCACCTTCGTGGTGCGAGGAGGTCTACTAGTGCTGGTGATGCTAGCTGACCCAAATGCAGGCTTCTATGGAGCTGCAAAAGGTCCGGGTGTTTGGGCTCTAGCTGTAATTATCCTAATCAGCATCTTCGCCACGGGCTCCTTCATCCTCTACAAGTTCAAAAGGAAGCTCCCAGGCAGCCGCAATGTTTACGCTCAGATGCACAACGAGAAGGAGCAGGAGATGACCAGCCCCGTCAATCACAGTGAGGACACCCAGCACATCATCCAGGGGGAGGAGTTCATCGACGACGACCTGGACTCGCAGACTCTAGgcaaccattCGGGTGTGGTCCTGAGCATCAACTCCAGAGAACTACACAGTTACCTGACGAGCTGATGGCCGCCCACGGCAATGCTAACGagctagcctagcctagctggTTGACGAGCACAGGGACTCCACTCggacttcctcctcctcctctctcctctccttttttcttctctttcttcctctgatACTTCACCTCCACACCTTGGCCTCCTCAACCCTCAACCTCCAGCTTCGGCGATTTTCTCGTTTTTCTTtgggtatttttttttgggggggggggggtaggatGAAGCTCTTGATGGCACCATACCAAGGACATCTGTGctgtgaaaaagaaaatcagttTGTACTCAAAATTAGCAAGACTGACTGAAAATGACTGGAAACCATTGCAGTCAGATTGTTGGAGAGGCCATACAGTAGTACTATGGCCTCTTGGTGACCAAAGACGGGTGTGCCAAAATGATTCCCAAGCATTAAGATAAAGAAGTCTAATCAAAGGCAAAACATTgttactccccccccccccccccctcgttttattttctctttgctTCCCAAAAAAATGGTAGACACTCTCTCTTCACAGGCAATAATGGATGGTAGGATATGATAGCCCTCGTGAATTTGCATATGACAAGTGTACGCATGCATACACAAGAGGGCGTAGTTGCACTTTCCTAAAGTCACACTCACAGGTACCTTGGAGCTCTCAGCTTCTttggaatatactgtatgtccacaAAGCATTGTTCATTTTTTCCCCGAATCTTGTAACCTTTGTTTATAGCTCACACATTTACAGAagttgttgtgtgtggtgtttaaAATAAGCACCGCCTTTGTAGGAGCTCATTTATCCGTCCCATGGTGCCTACAGCAGCAGACAATAATATCTGCTTGGTGACGTTACACATTGTTggctttatttatttcttataaACAGTATGCCCCTTCCTCCCCACACTTTCTGGGTCAGAGGTCAAAGCAGACTTGTTCCCCCTGGAGACGAGCCCTGTCATGGAGGGAAGGTGTAGTTCAATGTATTTTACTGTATCGGCCTATATTAGGCATAGCCCACGGTGAAATCACGTCTCCTTATAACGGTTTGGTTTGTtgtatgtaaatgtgtaaatagaAACAATCTCCACTTTGTACATATTCCCTttgacatgtgtgtgtgagtgttttacACTTGTACCAAAATACACAGCAACTAGTTTTGGAGCCAATCGTCACTTAAGTTCAAATAATTCTCACCGTTTCCAGTTTTGTCGTCGCCATGACTTGCTTCACATGCATCCATTTTCGATACTTCCAGTGTAATCTCATGAGCAAGGTCATTTTACGATATCCACCGTTAACTGGGATCATTTTCTCGTCTTATAAAGATACTCACAACTACACCGTGACAACTATGTATAATCGATATTTTTGATACACAGTTTTTCTCTGTACGTGTAAACACTGGTTATTGTTTCTCTCGCCTATGGGCTGAAGTGTTTTAGTTTCTTTGTACTGATGATGTAAACAGTGCTGTCGACACACACTAAACAGCAGCTGGACAGGTCTACAGACTCTGAATCAAAAAGGTCCATGGATAAAAAGGCCTTTGAGGACTTCCAATGCTACCATTACCACCCAGATCACATTTGCCTTGTATTTGATACAGCCAGCAGCTCACATTCACTCATCTTGATTCACACCTTGACTTATCTTTTGTAGATATTCTGCTCATGTTTAACTTGTTCTTAGTTTTTTCTAGTGATGTGTCGTCATGTATCAGTGCCCCTAACCTTAACAAAATGGGGAAAGTAGGACATTTGATATtccaatataataataatggagTTTCACACCTGATGGCACAACCATGTAATTTCAACCGCAccaattttcttttattatttttcctctttctgcagggtttgtttgattttgcttttaaaaacaattgCGTGTCCTCAACAGGACGCACATTGCACATAAACCTGCATCCTGGAATAAATCACTCCCACAACTTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189291 lncRNA downstream 5076 1012965 ~ 1013182 (-) True G140360
TU189286 lncRNA downstream 65786 952156 ~ 952472 (-) True G140355
TU189277 lncRNA downstream 107583 910458 ~ 910675 (-) True G140349
TU189276 lncRNA downstream 114619 903408 ~ 903639 (-) True G140348
TU189266 lncRNA downstream 141912 875822 ~ 876346 (-) True G140338
TU189356 lncRNA upstream 31921 1461638 ~ 1462865 (-) True G140413
TU189362 lncRNA upstream 38515 1468232 ~ 1478813 (-) True G140418
TU189389 lncRNA upstream 52021 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA upstream 52196 1481913 ~ 1482667 (-) False G140437
TU189390 lncRNA upstream 53085 1482802 ~ 1485299 (-) False tada2b
XM_039823311.1 mRNA downstream 104578 906545 ~ 913680 (-) True LOC120573525
XM_039823400.1 mRNA downstream 411540 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA downstream 411540 600634 ~ 606718 (-) True LOC120573590
XM_039823396.1 mRNA downstream 880021 135443 ~ 138237 (-) True LOC120573587
XM_039822937.1 mRNA upstream 53072 1482789 ~ 1488426 (-) True tada2b
XM_039822938.1 mRNA upstream 62557 1492274 ~ 1500316 (-) True LOC120573289
XM_039823242.1 mRNA upstream 120811 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 196174 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 196174 1625891 ~ 1649432 (-) False tspan5a
TU189195 other downstream 566588 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 590774 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 599252 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 601177 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 602390 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 621764 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2725207 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2844934 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2844934 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2844934 4274651 ~ 4275274 (-) False G141027

Expression Profile