RNA id: XM_039822737.1


Basic Information

Item Value
RNA id XM_039822737.1
length 3776
RNA type mRNA
GC content 0.50
exon number 20
gene id pygmb
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4332263 ~ 4351683 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACATATAATAGGCTGGGCCGTCACATCCCAACGGCTGTCTGTGTCCAGAGGAGAGAGTCAGAAGAAGAGTGGGCAGGCTGCCGGGTGTAATTTAACTTGACGTTCAGTACAAACTAGACATAAACGGGAGTAAGCATGGCCAGGCCGCTGACGGACCAGGACAAGAGGAAGCAGATCTCGGTCCGAGGGCTGGCCGGGGTGGAAAACGTTACTGACCTGAAAACTAATTTTAACAGGCACCTCCATTTCACCCTGGTTAAAGACCGAAATGTGGCCACCAAACGGGACTACTACTTTGCCCTGGCCAACACAGTCCGGGACTACCTAGTTGGCCGCTGGATCCGGACGCAGCAGCACTATTATGAGAAAGACCCCAAACGTGTCTACTACCTCTCCCTGGAGTTTTACATGGGCCGGACTTTGCAGAACACTATGGTGAACCTTGCCTTGGAGAACGCCTGCGATGAAGCCACATACCAGCTGGGCCTGGACATGGAGGAGCTGCAGGACATCGAGGAAGATGCTGGTCTAGGCAACGGTGGGCTGGGTCGTCTGGCTGCTTGTTTCCTGGACTCCATGGCCTCTCTGGGTCTGGCAGCTTATGGATACGGCATCCGCTACGAGTTCGGCATCTTCAATCAGAAAATTGTCGACGGCTGGCAGGTGGAAGAAGCTGACGACTGGCTACGTTACGGTAACCCCTGGGAGAAGGCTCGCCCTGAATACATGCGCCCAGTCCACTTCTACGGACGAGTGGAACACACAGCTGACGGAGTGAAGTGGGTCGACACACAGGTGGTTCTGGCTCTTCCCTATGACACCCCAGTCCCCGGCTACAGGAACAACATCGTCAACACCATGAGACTGTGGTCTGCTAAGGCCCCATGTGACTTTAACCTCAAAGACTTTAATGTTGGTGGCTACATTCAAGCCGTGCTGGACAGAAATCTGGCTGAGAACATCTCCAGGGTTCTCTACCCCAACGACAATTTCTTTGAAGGGAAGGAGCTGCGTCTGAAGCAGGAGTACTTTGTTGTAGCAGCAACTCTTCAAGACATCGTCCGTCGATTCAAAGCCTCCAAGTTTGGCTCCACAGAGTTTGTGCGACTAGACCTTTCTACGCTGCCAGACAAGGTGGCCATCCAGCTGAATGACACCCATCCTGCTATGGCCATCCCTGAGCTGATGAGGATTCTGGTGGACGTTGAGAAACTCACCTGGGAGAAGGCCTGGGACATCGTGGTTCGTACCTGTGCCTACACCAACCACACCGTCCTGCCTGAAGCCCTGGAGCGCTGGCCCGTCGACCTTTTCCATAACCTGCTGCCGCGGCACCTGGAGATCATCTACGAGATCAACAGGAGGCACCTGGAGCGCATCACCAAGCTTTACCCTGGAGATCTTGACCGTCTGCGCCGGATGTCCCTGATTGAGGAAGGGGACGTCAAGAAAATCAACATGGCTCACCTGTGCATTGTGGGATCTCATGCTGTCAACGGAGTGGCCCGCATCCACTCTGAAATCATCAAAGACACTGTGTTCAAGGATTTCTACGAAACAGACCCTGAAAAGTTTCAGAACAAGACCAACGGCATCACGCCCAGGCGCTGGCTGGTCATGTGCAACCCTGGCCTGGCTGAGGTCATCGCAGAGaggATTGGTGAGGACTACATCCGTGACCTGGACCAGCTGAAGAAGCTTCTGGACTTTGTGGACGATGACTCCTTCATTCAGGATGTTGCCAAAGTCAAACAAGAGAACAAGATGAAGTTTGCTGCCTACCTTGAAGAGCAGTACAAGATGAAGATCAACCCAAACTCCATGTTTGATGTCCATGTGAAGAGGATCCACGAGTACAAGAGACAGCTGCTCAACTGCCTGCACATCATAACGCTGTACAACCgAATCAAGAAGGAACCCAACAATTCATGGACCCCCAGGACCATCATGATTGGAGGAAAGgcgGCTCCAGGTTATCACACTGCCAAGATGATCATCAAGCTGATCACATCAATTGGTGACATTGTCAATAATGACCCTGTGGTGGGCGATCGCCTCAAAGTCATCTACCTGGAGAACTATCGGGTCACGCTGGCTGAAAAGGTCATCCCTGCATCTGACCTGTCGGAGCAGATCTCCACTGCCGGTACTGAGGCCTCTGGCACCGGCAACATGAAGTTCATGCTGAACGGGGCTCTCACCATCGGCACCATGGATGGAGCCAACGTGGAAATGGCAGAGGAAGCTGGGGAGGAGAACCTCTTCATCTTCGGCATGAGGGTGCCCGATGTGGAGGCTCTGGACAAGAAGGGCTATGACGCTGCGTCGTACTACCGCCGTATCCCCGAGCTGAAGCAGGCGATGGACCAGATATCCGGAGGCTTCTTCAGCCCCAGCCAGCCCGACCTCTTCAAAGACCTCGTCAACATGCTGATGAACCACGACAGGTTCAAGGTGTTTGCAGACTATGAAGACTACATCCAGTGTCAAGAGAAGGTCAGCGCGCTCTATAAGGACCCTAAAGAGTGGACCAAGATGGTGATCCATAACATCTCCGGCTGTGGTAAATTTTCCAGTGACCGCACCATTTCCCAATATGCCAGGGAGATCTGGGGCATGGAGCCCAGTTTGGAGAAGATCCCTGCTCCTGACGATCCTCGCTAAACCACATCTGCCTCCTACACCTTACCGTAGCTCACTGTGTGGTCCGACCACTGCAGAAGAACCCTGTAGCTTTTCACTGTGTACTGTGGCATTATTTCTTTTCACACATTACTCATCCCCACATCTGCCTCTATCACGGTAACATGTATTGAAGTGGGcttattcagaaactgtattcTGTATGTTCCCTCTGTGCACCAGCAACACATAGTCTCACTCTTGAGTAAAAACCTTGTATCTCCACGTAAGCCTTTCAGCAGTTAGGAAACAGCCTAGATTTCAACTTGGAATCATGGGATTTTTTAGTTGGcgttaaaacattaaagatatACTTCCTTATTTTGTGATAGTGCCCAATAGTTCTCCGATTATCCAAAGTTTACACACTGATGTTTAAAATTCTAGGTCCTAACATCAACTAGGAGCTGAGTGGAAAACCTTTTGAGTGCTATAACAAAATGAGGGACTATATCATTACTACAGTGATTCGAAACCCCAATTCTAACTACATTCCCCTTCTACTTCTGAGCCAATATGGCTACCAAAACCCAGCAAACATGCCAATAAACCTCACTATTGTTATGGTTCCAAACCAGCCCATGTCTTCCATGGAAGAGGGAAGGGCCACTCGGTGGTTACGGTGAACCACAGCCTCATAGCAGCACTGTGACTGGAACCATTTTCTCCATATTCCCCGCAGATTaacattcatattaatgtttcgTATTAAAAGACTTCCCCTGGCTGCCCGCTTAGTGTTGAATATATCCATTTATGTGTGTGATCAGTTTGCCTGCATGTTTGTGTCCGTCTCTTCCTAAAAGTGACCTTTGTTAGAAAAAACAAAGCCTTTTCTGCCTAAAACCTAAGTGACTGAATTAATCTTTGGAAGATGTGTGTATTCTGTGTtatagttttgtgtgtgtgtgtgtgtgtgtgtgtatatatataacatatgtGAGTCCATGATGTACTGTAACAACATGCTGTCCTGCTTCAGCTCTGGCATATGACTGTGGCGCTGCCTGCAGAGGCTGCAGAAAGAACCTTTCATTTCCCTCTCAGCCAGCGCGTTTCTTTTTTAGTCAATAAATGATCAAACTCAGCAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 244 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 12621 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 16719 4314178 ~ 4315544 (-) True G141041
TU190194 lncRNA downstream 56989 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 126747 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 126747 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 132055 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 134220 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 137617 4489300 ~ 4489504 (-) True G141117
XM_039823323.1 mRNA downstream 506 4321764 ~ 4331757 (-) True LOC120573533
XM_039823282.1 mRNA downstream 19397 4302645 ~ 4312866 (-) True slx1b
XM_039821295.1 mRNA downstream 72450 4256635 ~ 4259813 (-) True ing2
XM_039822508.1 mRNA downstream 213879 3803986 ~ 4118384 (-) True adam19a
XM_039823625.1 mRNA downstream 874415 3455520 ~ 3457848 (-) True LOC120573709
XM_039821578.1 mRNA upstream 1918 4353601 ~ 4368352 (-) True sf1
XM_039821577.1 mRNA upstream 1918 4353601 ~ 4368208 (-) False sf1
XM_039821582.1 mRNA upstream 1918 4353601 ~ 4367232 (-) False sf1
XM_039821581.1 mRNA upstream 2905 4354588 ~ 4368208 (-) False sf1
XM_039821579.1 mRNA upstream 2905 4354588 ~ 4368208 (-) False sf1
TU190189 other downstream 56989 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 56989 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 56989 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 56989 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 176716 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 289812 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 308938 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 606996 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 748022 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1245275 5596958 ~ 5600462 (-) True G141400

Expression Profile