RNA id: XM_039822750.1


Basic Information

Item Value
RNA id XM_039822750.1
length 783
RNA type mRNA
GC content 0.45
exon number 5
gene id txn
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18425792 ~ 18429733 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTGTGGCCTGCGGTTGAGTAGCTTGACGCAGCTGCGATAAAAACGCGGAGTGTCTGCTGAAAAAAAGGATTCACAAACTTAGCCGCTCCTTGTTCACCTCGGGGACGTTCACTCAACAGCTATCATGGTTCGCGAAGTGCAAGACTTGGCCGAGTTTAAAGCCATCCTGGCGGAAGCTGGAGACAAGCTGGTAGTGGTGGACTTCACAGCCACCTGGTGTGGCCCTTGTAAACAGATTGGCCCAGAATTTGTAAAAGAGTCACAAAAAACAGAGAACAATAATGTGATTTTCTTGAAGGTGGATGTGGATGAGGCCGAGGATGTGAGTGCATTCTGCAAGATTAGCTGCATGCCTACATTCCTGTTCTTCAAGAACGGAGTAAAGGTGGACGAGTTCTCCGGTGCTAATAAAGATACACTGGTTCAGAAACTGGAAGCTTTGAGAACATAAAGTCCCACGACCAatccacacacaccaccacccacacacaccctcatTGTATAAACCACAGTAGTCCCTGTTGTCCTTTGTACATCCCTGAGAAATTCCAGTTTCACGTCATGTACAATACCCATCATGTCTTCTATTCCACACGGACGACAATTGGTGACACACTCTAGTCCTGTCAATTTGGTGTATGTATTTACGGTCTTAACTGAAATTTGATTAAAACCTGCTGACACCGGAGGAACACTTttaattctgtttttatatgAGATTGGCTTTGCTCCTGACTTTCTTTGTCGTGTTCAAGGTGGATTTAATAAAAGGTGAAATACA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K03671 trxA; thioredoxin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641738.1 lncRNA downstream 175735 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 252771 18169293 ~ 18173021 (-) False mrpl52
TU194348 lncRNA downstream 365239 17973899 ~ 18060553 (-) False LOC120573700
TU194639 lncRNA upstream 106414 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 270476 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 398731 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 506242 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 533133 18962866 ~ 19056782 (-) False clcn3
XM_039821767.1 mRNA downstream 136958 18267721 ~ 18288834 (-) True slc7a8a
XM_039821768.1 mRNA downstream 160775 18259034 ~ 18265017 (-) True gmpr2
XM_039821769.1 mRNA downstream 160802 18259034 ~ 18264990 (-) False gmpr2
XM_039822645.1 mRNA downstream 183938 18234060 ~ 18241854 (-) True tinf2
XM_039822641.1 mRNA downstream 196785 18218944 ~ 18229007 (-) True efs
XM_039822758.1 mRNA upstream 1660 18431393 ~ 18437596 (-) True LOC120573208
XM_039822757.1 mRNA upstream 1660 18431393 ~ 18436235 (-) False LOC120573208
XM_039822756.1 mRNA upstream 1660 18431393 ~ 18436198 (-) False LOC120573208
XM_039822760.1 mRNA upstream 69007 18498740 ~ 18522741 (-) False nat8l
XM_039822759.1 mRNA upstream 69007 18498740 ~ 18522736 (-) True nat8l
TU194399 other downstream 302102 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 364637 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 604715 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 672803 17744954 ~ 17752989 (-) False tbc1d19
TU194122 other downstream 1176238 17248088 ~ 17249554 (-) False LOC120572513
TU194667 other upstream 165369 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 264966 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 266363 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 268529 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 269125 18698858 ~ 18698931 (-) True trnan-guu_14

Expression Profile