RNA id: XM_039822758.1


Basic Information

Item Value
RNA id XM_039822758.1
length 1940
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120573208
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18431393 ~ 18437596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAACAGAAAGCAGTTTGTTCAAATAGAAAATACTAGTGAAACATGAAGTAAGCTATCCTAATGAAATAAATGCAACAATGAGTAACTTTCCCGAGATCAGTGCTAAGAGTGTATTGAGAGAGGCTGCATATAGCCCATAGTTTAAACAGAATAGAATTTAGAGGTTTCTTTTTCGTCCCCCTGGATATCATACTGTACAACAACAACTGTGGTATGTGGTATCGCACATCACTAATTATAACCTTCATCAAGCTGCCCCGAACAGATAACCATGGTCCAAGCCAAGACGTGGATCCTTACCAAGCACTTTGACGGCTTCCCGAAGGACAGCGACTTTGAGCTTAAGGTGGAGGAGCTTTCGGCACCCAAAGATGGGGAGGTGCTTTTGGAAGCAGTGTTTCTCAGTGTCGACCCATACATGAGGCCATTCAGTAGGGTTCGCATGAATGAAGGCGATGTGATGATTGGAACTCAAGTGGCCAAaGTGATTCAAAGTAGTAACCCAGCATTTCCTGTGGGAAGCCATGTTGTTGGTCGTTGTGGCTGGAGAACCCACACAGTCTGTGATGGGACAGACCTCATTCCAGTCATGCCTGACTGGCCGCAAGACGTCTCGTTGTCCCTGGCTCTGGGTGGCATCGGCATGCCAGGACTGACAGCTCTGTACGGGATAGAAGAAGTCTTGGGACTCCAGAAGGGGGAGACCCTGCTGGTGAATGCTGCAGCCGGGGCAGTGGGCTCCGTGGTGGGCCAGATTGCAAAGATCAAGGGCTGTAAAGTGGTGGGTTCAGCAGGGTCTGATGCCAAGGTGGCTTTCCTCAAAGAACTGGGCTTCGATGAGGCCTTCAACTACAAGACTGTTGGTTCCCTGGAGGAGGCACTGAAGAAGGCTTCTCCAGAAGGATATGACTGTTTCTTTGAAAATGTGGGAGGCCCTTTTTCAAGCGTTGCGATACAGCAAATGAAGAACTTTGGAAGAATAGCTGTGTGTGGAGCTATTTCCACATATAATGACACCACACCCCAAACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTTAAGATGGAGGGCTTCATGCAGAGCAGGTGGGAGCACAAGCACCCGGAGTCCCTTAAGAGGCTGATAGGATGGTTGAAAGAGGGCAAACTGCAGTGTCGGGAGCACATCACAAAAGGCTTTGAAAAGATGCCAGCTGCTTTTATGGGGATACTGCAGGGAGAAAACGTCGGCAAGGCTATTGTCGCAGTCTGATGTGGAAAGCGAGATCAATGGAGAAGAATCAGTATTATTAATACCTGACCCATTATTACAGAATTCATACATGAAGGACTGAGCAGTAGACAGTTGGCAACTATTTTTTCTTCGTattaacagataaaaaaatgtgattcatcATATTTAGCATTAGTTCAGAAGTCATTGTTAGAGAGTTAAGTCtgaaaccattttttttatttagatggTTTTATCAAACTGCAACATCTGCTAGGTTTGGATTTTCATTCATGGTAAGGCACATTTTTTGGTAATGCGTTTAAATAAAATAGTTACTTTAAAGAATCCCTTTTGGAAGCACAAATCTTAGCATTTGTTCCTCATGTGCCACTACATGGTAGCAAACTAGTTGAACCTACTgaatttttttacaaattagtttttaacCACCATCCAGATAATTGAGTATACAGAACATTGTTTGGGAGACCTCAGACTACTGTGGGAAATCGGCAAGGTACGAGAAGAGCGTTTTACTCTATGAGGTCGACCCAAGATTGTTGGTCTTCTATGCCAGAAAGTACCTGAATGAGATGTGTAGATCTGCTGCTGATACATTCATACGTTACTCACTGTAACATAATTAACCATGTGCTTTGTATTTAGTGAGAGCTTTTGTATAAGTAATAAAATTCAGCgtatttgttttcaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13948 PTGR1, LTB4DH; prostaglandin reductase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641738.1 lncRNA downstream 181336 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 258372 18169293 ~ 18173021 (-) False mrpl52
TU194348 lncRNA downstream 370840 17973899 ~ 18060553 (-) False LOC120573700
TU194639 lncRNA upstream 98551 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 262613 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 390868 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 498379 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 525270 18962866 ~ 19056782 (-) False clcn3
XM_039822750.1 mRNA downstream 1660 18425792 ~ 18429733 (-) True txn
XM_039821767.1 mRNA downstream 142559 18267721 ~ 18288834 (-) True slc7a8a
XM_039821768.1 mRNA downstream 166376 18259034 ~ 18265017 (-) True gmpr2
XM_039821769.1 mRNA downstream 166403 18259034 ~ 18264990 (-) False gmpr2
XM_039822645.1 mRNA downstream 189539 18234060 ~ 18241854 (-) True tinf2
XM_039822760.1 mRNA upstream 61144 18498740 ~ 18522741 (-) False nat8l
XM_039822759.1 mRNA upstream 61144 18498740 ~ 18522736 (-) True nat8l
XM_039821355.1 mRNA upstream 98547 18536143 ~ 18539623 (-) True c14h4orf48
XM_039821643.1 mRNA upstream 113944 18551540 ~ 18561053 (-) True faah2b
XM_039823285.1 mRNA upstream 175077 18612673 ~ 18626072 (-) True pik3c3
TU194399 other downstream 307703 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 370238 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 610316 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 678404 17744954 ~ 17752989 (-) False tbc1d19
TU194122 other downstream 1181839 17248088 ~ 17249554 (-) False LOC120572513
TU194667 other upstream 157506 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 257103 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 258500 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 260666 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 261262 18698858 ~ 18698931 (-) True trnan-guu_14

Expression Profile