RNA id: XM_039822827.1


Basic Information

Item Value
RNA id XM_039822827.1
length 3047
RNA type mRNA
GC content 0.49
exon number 1
gene id paqr9
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1739323 ~ 1742369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGGTACCTGTCAAACCTCCTCGGTGTTTCGCTGAAATGCCGGTTGGGCTTCAGCCTCACAgggctacagacagacagacaaacagacagacagacagacccacgGCACTGTCCGAGCTTTTCACCCGCCAAATATATTTAACGTAGCCATGCGTTAAAGGACTGAACACCAGCTCACTGACACGTTTTTGTGCTCTTTCGTCCCGGGGGATTTATTTTTCTCTACAGCGCTCTGCATTACAACGGAATTGGAGCTGAATGAATTGAAAGTCGGACGGTGGGTACAGGCTGATGGACCGGGAACAACGGGGGCAATAGAAGCCTGCAGTGCCCTGATATAGTGCTGAACGCCAGCACTGACCTACATACCGCAGAGCTTAATGGACGCGTCTTCAGGACATCTCTGCTGTAGTAACTGACGTCCTGTTCAACCTTGTAACACAGTAATAAGTGaccttcatttttattttgctgcGGCAGAACTGTCCATAACAAGGTGAATGTGCGTATGACCATAATCATCCATGCAGACCATGTCCTATGCAAAATAAGGGCACAAATTGAACAGCATGAAAAGGATTCCGTGCTGGATGTTTGGCTGACCTTTGGTAACGTTCTAGGGTTAAGAGGAAACCAGATGAAAAATTAACCAAGCAGGTGGCCATCCTGGAGGATCCTGGATACTACACTCTCCCCCTGCCATTTTCTCTCAGTATCCTGCTGGACTATGACATTACACCAGCTTTGCTCTTCGGATTAGTCTACAGCTCACGAGGCCCAGGCAAAGCCGGGATCAAAGGTCAGAAGAAGAGCAGGGCTGAAAGAAGCCTGCAGATGCCTTATCTAGTCGTAAGCAAGATAATTCATGGTGATCACATAACATGCTGTGATCAGCAATAAATGAAACAGCCAAGCAATAAAAAGGGAAGGGCTTTGCAGAGAAAGTCCAATTCAAGTAGAGATTCACTTGTGTTGCCGTCATGCTTCTGAACTGTGGGCAGCCGTTACCTCTTCTGAGGCATACGGACGTGCCGCCTCGGGTCATAGAAAACTTCATCCTGACTGGCTATCGCTTCCCAAACTACAGCCTGAGGGATTGCTTACTATCAGCATTCAGGCCCACCAATGAAACAGGCAACTTCTGGACACATTTCCtcccagtttttattttttcgtaCTATTTTGTGGAGGTGTTTGGTTGGGAAGGTGCGCCACATAGTGACGGCCCGTTCTTCTATCCTTTGTGGAACTACTTTATCGGGGTGTTCTGTCTTCTAATGGCTAGCAGCATGGCCCACCTGCTCAACTCGATGTCTCTGGTGGTAAGAGAAGTCTGCTTCTTTGTGGATTACGGCACAATCAGTTCCTACACGGTTGGCTCATCGTTGGCATACTACTACTACATCCACCCTCGGGCAGGGATAGTGGAGACCGGAGGACGCAATGGCTCCCATGTGGACTTGAAAGATGAACCTGCAGGCTCTCTTACATCACCCTATGCAATCCCAgatttctgtgtattttttgAGACCTTCTACATCCCGTCCGCGTGTGTTGTAGCAATCATTTGTGTCTTATCTTGCTGCAACTCTCGCCAGAGGTGGAGGCGACACCGGTACGTCATCCGAACCTTTGTTTTCCTCCTTCCATTCCTCGTTTCCTCCACGCCAGTCTTCTACCGCCTCCTCACCAGATCACCTTACTctaccacctcctcctcttttgCCGCTTCCAGCTCCACGGCCAGCTACTTCTATCGCCACTGCCTCTGGCTGCTGGTGTCAGCCGTCTTCAATATCAGCAAGTTCCCCGAGCGGCTATCCCCGGGTCGCTTCGACATCTGGGGCCACAGCCACCAGTGGTTCCACTGTTGCACGTTTTTGTCCATCCTCGACGAACTCCACATGATCAAGACTGAGGTGAGGGCAATCCTGCTCAGCCCGACTCTACTGCTGCCCCCTGCCACCCTCTCTCGCCTACCTGGACCTACCATAGCTTCCACCTACGGGGTGATGTTCCTCCTCCAGACCACCATCGTCTCCATCATCGTTTGGTTCTCCTGGCACGCCAACTGCATCTACGGACCAGAGAGAGATCAGCTAGCAAAGGAAAACCCTAAGAAACACATGAAATGCCACTAATCACAAATACATCTTTTTTCTTAATCATCTTCAACTGTGAAGGAAGATTTGCACATGCATACAGAGCCATGCCACAAAGAGATGCGCACAAGTAAAACAATATTGTCCCTCCTGATTTTCAAGTCTGTCATATGTTCCACCCCCTTCAGGAGTGTTTTTCAAGCTCTCATAAGCGGTAATCGGGGACAACGTGAGATGAAAGGATTATATTCTGAGCTCACCACAGGGTGGCTGTCTGGTTGAGTGGATATTGAAAGACATTGCCAGTTCTTTCCCCTGAGCTATTTCAGAATGTTCTAACAGGATGTCTGAGCAGTGGCGATACCTACCTCTAGGGACTGCGCACTTCAGGACACAGGAAAGGTGTTGGTCACCAGGAGAACATATTCCATGTAACATTTGGGTAATGTGGCTTAAATGTCAGCGTGACCATTTACAGAAGTTGCTGCGTGTGTAGTCTGTTGGCAAGTAGTTCCTCCTGTGGCACTTCCCCTTGCTCTGACCTTAAACAGCATCTTTTGCAAAGTAGCTGCATAGGTTGTAGTAGAACCTATAGTTTCACGTCGAATGGATCCTTTTCTGGCCTTTGTTAACCacatctttctcttcctctgcctTACACGAACGCTCACAATGCAATCTCATTTCCTCTCTTTCCAAATGACCCTTGCAGCAGGAAGTGCGGTGGCCTTGACGACGCAACAGAAATAGCTGAGAGCTCGTATCAGTCGTACAGTAAAGCACTTTCAGGGGGCCGGTCAAACTCGCCCTGTCATTAAGAAGCCATGCTTGCTTATTAACCTTAAAGGACGCGTAACATTACTGAGGCACATAATGATGTCCTGCTGACATGTTCTGTTGGAGTACTTGGGTCATTTCAATGTGAAGTGTATAGTGCtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189417 lncRNA upstream 164463 1574589 ~ 1574860 (+) True G140463
TU189381 lncRNA upstream 215172 1523750 ~ 1524151 (+) True G140435
TU189379 lncRNA upstream 217925 1519888 ~ 1521398 (+) True G140433
TU189363 lncRNA upstream 256651 1481804 ~ 1482672 (+) True G140419
TU189364 lncRNA upstream 256761 1481701 ~ 1482562 (+) False G140419
TU189495 lncRNA downstream 6478 1748847 ~ 1751285 (+) True G140518
TU189485 lncRNA downstream 44935 1787304 ~ 1788116 (+) False G140516
TU189489 lncRNA downstream 44935 1787304 ~ 1788116 (+) False G140516
TU189490 lncRNA downstream 44935 1787304 ~ 1788374 (+) True G140516
TU189491 lncRNA downstream 44935 1787304 ~ 1788116 (+) False G140516
XM_039822823.1 mRNA upstream 16719 1677212 ~ 1722604 (+) False frem1a
XM_039822822.1 mRNA upstream 16740 1677212 ~ 1722583 (+) True frem1a
XM_039822824.1 mRNA upstream 16740 1677212 ~ 1722583 (+) False frem1a
XM_039822825.1 mRNA upstream 40813 1677210 ~ 1698510 (+) False frem1a
XM_039822826.1 mRNA upstream 41275 1677210 ~ 1698048 (+) False frem1a
XM_039821287.1 mRNA downstream 296601 2038970 ~ 2102372 (+) True LOC120572142
XM_039821755.1 mRNA downstream 467839 2210208 ~ 2210559 (+) True LOC120572444
XM_039821740.1 mRNA downstream 536565 2278934 ~ 2450242 (+) False ank2b
XM_039821745.1 mRNA downstream 571117 2313486 ~ 2450242 (+) False ank2b
XM_039821738.1 mRNA downstream 585866 2328235 ~ 2450242 (+) True ank2b
TU189470 other upstream 13855 1718339 ~ 1725468 (+) False frem1a
TU189223 other upstream 1116734 621116 ~ 622589 (+) False LOC120572292
TU189184 other upstream 1403147 335882 ~ 336176 (+) True G140263
TU189594 other downstream 279728 2022097 ~ 2030627 (+) False G140582
TU189616 other downstream 280223 2022592 ~ 2032225 (+) True G140594
TU189672 other downstream 313070 2055439 ~ 2059367 (+) True G140613
TU189860 other downstream 1085683 2828052 ~ 2903571 (+) False ablim2
TU189858 other downstream 1115386 2857755 ~ 2903571 (+) False ablim2

Expression Profile