RNA id: XM_039822828.1


Basic Information

Item Value
RNA id XM_039822828.1
length 4465
RNA type mRNA
GC content 0.48
exon number 21
gene id aco1
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1749519 ~ 1774918 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttgttgttgcagctgGCAGCGGACCATATTGGAACCAGGAGCTCTTGTATAAGACTAGCCTGCTGACAGTGTACAGATAACACACGGCCGTGCTCTGCGGTATCTCCTCTGCTGCACACATAAATCTGTACTGACACACAGAGGAGGATGTCTGCGACTGTGAATAATCCCTTTCAACATATAGTTGAGCCTCTGGACCCCACTGACCCAAATAAGCAGTTTTACAATCTTTCCAAACTCGGAGATCCAAGATATGATCATCTGCCCTTCTCCATCCGGGTTCTCCTGGAGTCTGCGGTCAGGAACTGTGATGGGTTTCTGGTAAAGCGCTCAGATGTCGAAAGCATCCTCAACTGGAAGCAGACCCAGACTCAAACTGTGGAGGTACCATTCAGACCAGCTCGGGTCATCCTCCAGGACTTCACTGGTGTCCCTGCAGTGGTGGACTTTGCTGCCATGCGTGATGCAGTGATGAAACTAGGTGGTGACCCAGAGAAGATTAATCCTGTTTGCCCTGCTGATCTCGTCATTGATCATTCCATCCAAGTGGACTTTAACAGGAAGTCTGATAGCCTTCAGAAAAACCAGGACTTGGAGTTTGACCGCAACAGAGAGAGATTTCAGTtcttaaagTGGGGCTCTAAAGCCTTCAGGAACATGCGGATCATTCCTCCTGGTTCGGGGATTGTTCACCAGGTCAACCTGGAGTACTTGGCTCGAGTGGTTTTTAACTATGCTGGGTACTTCTACCCTGATAGCCTGGTGGGCACCGATTCCCACACCACAATGATTGATGGGCTGGGAGTCCTGGGCTGGGGTGTGGGTGGAATTGAGGCGGAGGCTGTCATGCTGGGTCAGCCAATAAGCATGGTCCTGCCTGAGGTGGTGGGATACAAGCTGTCCGGGACCCCAGACAAGTTCATTACCTCCACTGACATTGTCCTCACAGTTACTAAGCACCTCCGTCAGGTGGGTGTTGTTGGGAAGTTTGTGGAGTTTTTTGGCCCAGGTGTTGCTCAGCTGTCCATTGCTGACAGAGCCACCATTGCCAACATGTGTCCAGAGTACGGAGCCACAGCAGCTTTCTTCCCCGTGGACAACGTCAGCATTCAGTACCTCAAGCAGACCGggagagaagcagagCAGCTGGCCTACATTACAAAGTACCTGAAGGCAGTTGCCATGTTCAGAGACTACAACGATGTCTCTCAGGATCCAGATTACACTCTGGTTGTACAGCTGGATCTGAGCACCGTGGTTCCATGCTGCAGCGGCCCCAAAAGACCTCAGGACAGAATTGCTGTGTCTGACATGAAAACCGACTTTGAAACCTGCCTGGGAGCAAAGCAAGGTTTCAAGGGTTTCCAGGTGGCTCCGGAGCGTCACGGCACTGGGGTCCCCTTCCAGTTTGATGGGAAAGAGTATACGTTAAGCCACGGCTCTGTGGTCATCGCTGCCATCACCAGCTGCACCAACACAAGCAACCCATCCGTCATGCTTGGAGCCGGGCTCCTTGCAAAAAAAGCAATAGAGTGTGGCTTGAGTGTGAAGCCGTACATAAAGACCAGCCTGTCACCAGGCAGTGGCGTGGTCACCACCTACCTAAAGGAGAGTGGTGTTATGGACTACCTCTATCAGCTGGGCTTTGAGGTTGTTGGCTATGGTTGCATGACCTGTATAGGCAACAGTGGGCCACTCCCAGAGCCGGTGGTGAACGCCATAACCCAGgGAGATCTGGTTGCTGCAGGTGTCCTATCAGGGAACCGAAACTTTGAAGGGAGAGTCCACCCCAACACCAGAGCAAACTACCTGGCTTCTCCACCACTAGTCATCGCCTATGCTATAGCCAGCACTGTGAGGATAGACTTTGAGAAAGAGCCCGTTgCCATTAACTCTGAAGGCAAAGAGATTTTCCTGAGGGATATCTGGCCCACACGGGAGGAGATCCAGGCTGTGGAGAGAATGTTTGTCATCCCATCCATGTTCAAAGAAGTCTATGAGAAGATTGAGAAAGTGAATGAACGCTGGAACTCTCTGGTTGCTCCCTCTGACAAGCTGTATACCTGGGACCCCAAATCAACCTACATCAAGTCACCACCGTTCTTTGATGGTTTGACCAAGGAGCTGAAGCCACCCAAGTCCATACATGACGCCTACGTGCTGCTGAACTTTGGAGACTCTGTCACCACTGACCACATTTCTCCTGCTGGGAACATCGCCAGGAACAGCTCCGCAGCACGCTACCTGACCAACAGGGGTTTGAGCCCTCGTGACTACAACTCGTACGGCTCGCGTCGAGGTAACGACGATGTCATGGCCAGAGGGACGTTTGCCAACATCCGCCTCTTTAACAAGTTCCTCAACAAGCAGGCGCCACAAACCATTCACCTGCCAACTGGAGAAACGCTGGATGTGTTTGATGCTGCAGAGAGATACCAGCAGTCCGGCGTCCCTCTGCTGGTTCTCGCAGGGAAGGAGTACGGCTCGGGCAGCTCCAGAGACTGGGCAGCTAAGGGCCCCTTCCTACTGGGTATTAAGGCAGTTGTGGCAGAGAGCTATGAGCGGATCCACCGCAGTAACCTAGTTGGGATGGGAGTGATTCCTCTGGAGTATTTAGAAGGAGACACCGCTGACAGCCTGGGACTGACCGGCCGAGAGCGCTACACCATCCTCATCCCCGAGCAGCTCACGCCCCGGATGATAGTCGACGTCAAGCTCGACAGCGGGAAAACATTCCAAGTGCGGATGAGATTCGACACGGACGTGGAGCTGGCGTATTTCCGCCACGGAGGCATCCTCAACTACATGATCCGCAAGATGTCCGAAAACTAACACGCCAAGTACAGCACGGAGCCAGAGCAACACGTGTCATTTTCTAATTCTCAGCTGCAGTCTTAACATGACAGCAGTGTAACGGTTTACAGAAGAATAACGTCCAATCAATGTCCATGTACAGCCATTTACAAAGAGTTGATTTACAGCCAGAAAACACCGATGTTCTATTTTTTGAGAATGCTGCTACTTTCTTTAGTCGCTGAACAGACctgtgtgggggggaggggatatatatatatatatatatatatatatatataaacataaacacacacagtagatgCCATTACAACGTGGgtcttatttttgtcttttaggTCTTTATCAGTTATGATTATATTTGTTTGCCACTCTCTAGAGCTGTTAGGATTCCAGCCGCTGTGCTCAGTCAGTAGTACTACATGTAGGTTATCCCGTCAACCCCCCAACTGTTTCTATCCTTTTGGTGGGAATGTTCTCCTTGTTTCATTAGTGAATATTGCATTGGGTTGCTATATCTACATAGTTGCATTCAGTGTGATAATGCGTTGTGATCACAGTGCGCAGAAGGGTTACAATGGAGGTGGTGTTGTTAGATGAGCTCTTTTCAATATGCTTCCATATGTTTTTCATTCTCAAAAATCTCTACCAGcatcagaaaacacaaatggcCAATCACAGTAGCCGCCGTAGCCCCTTAAAGCAGAAGAAAGACTTACatctaggcatgggccggttaccggtttcaaggtaCACCAaggtttcaaaaccactaacattttctgtcaaaccgttcctaaggtatgagctgttttttcATGATTcttcaaggacagaaagtgcagtttagaaatccctctccCTTGTTTTTCAcccagacatttcaaaaataatacatttatagcTGTCATTGCAATACCGTGAACCTGTGGCATTTTTGTCAGAATCTCTCTTCCATCTTCAGCTGCTATGTTCAAGGTTCCCTGGGGAGTTTTGGACCTTTTTAGTAGCAATATAGAGAAAGGTTTTTGTGTAGCTCCTGTGCATGATGTGACGCGATACATATTCCAGTTAATAGTTTGACACTATTCCACTGATCAACAGGTGGCAGTAATGTGCAAATATATACAACAAAGGCAGGGAAGAAAAAGTTAGGAACCATTGATTAAAAGTCCACAGCAATGCCTTAGTTAGAAATGACGAAAAGACCCATGTTGTAATAATGCTGAAATCTTCTTTTAAAAATAAGGACCATGTTGAGATTCAATAATATATTATTCTTGACTTTGAGTGAACTTTATTTACATATCAGCTTTTAAGCCAATACAGATGAGAAGTCCTTGATGTGTTCAGAAATCCAGATCTTCCATGACTGTGATGAGGAAGATCTTGTGATATGATTGAAAGCTCCAGAGAAGCTACTGTATGGACCATGTGGTGAGGTTGTTAACTCAGGGATTATGTCGGTTATAATATTGGTGGTGCAGGACCCTTTTTAAATCATAAAGGAAGAAATTGAGTGTgtactagaggtgtgaatcttcactgatctcccgattcgattacgattatcatgtcttcgattcgatatcacgatgcatcaAATAAATtgttctattaaagccatgtaggatatttaattcatagct

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189483 lncRNA downstream 24186 1719925 ~ 1725333 (-) True G140514
TU189455 lncRNA downstream 86267 1663021 ~ 1663252 (-) True G140492
TU189451 lncRNA downstream 109908 1623259 ~ 1639611 (-) True tspan5a
TU189407 lncRNA downstream 218569 1530235 ~ 1530950 (-) True G140454
TU189404 lncRNA downstream 227680 1519821 ~ 1521839 (-) True G140451
XR_005641667.1 lncRNA upstream 919 1775837 ~ 1779726 (-) False LOC120573239
TU189515 lncRNA upstream 1023 1775941 ~ 1782596 (-) True LOC120573239
TU189518 lncRNA upstream 12386 1787304 ~ 1788089 (-) False G140534
TU189519 lncRNA upstream 12386 1787304 ~ 1788089 (-) True G140534
TU189521 lncRNA upstream 15792 1790710 ~ 1790942 (-) True G140535
XM_039823278.1 mRNA downstream 84574 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 88507 1660137 ~ 1661012 (-) False LOC120573508
XM_039823148.1 mRNA downstream 100087 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA downstream 100087 1625891 ~ 1649432 (-) False tspan5a
XM_039823242.1 mRNA downstream 175395 1550528 ~ 1574124 (-) True slc1a1
XM_039823219.1 mRNA upstream 108984 1883902 ~ 1885687 (-) True LOC120573473
XM_039821465.1 mRNA upstream 244694 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 248101 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 679149 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 679149 2454067 ~ 2573483 (-) True camk2d1
TU189195 other downstream 1297849 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1322035 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1330513 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1332438 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1333651 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 276563 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2380006 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2499733 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2499733 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2499733 4274651 ~ 4275274 (-) False G141027

Expression Profile