RNA id: XM_039822909.1


Basic Information

Item Value
RNA id XM_039822909.1
length 2867
RNA type mRNA
GC content 0.53
exon number 22
gene id pde5ab
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2678945 ~ 2797531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGATCCGCGCGCACCGACGGACCGGCCCCCatgcagctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatttctccgTATTCATCATTCGGTACCGGCTCTGCTGTGGTTAGATGTAGCCGGTAACCGGAGCTCACAGCGGGAGACTCTGTTGTCGCCGTTGCGCCATGGAGGACTGCTGTTCCCCGGAAAGCGAGAGGATGGAAGCGTGGCTGGACGACCACTTGGAGTTCACCCACTCCTACTTTACCAGGAAGGCGTCAAGGGAGATGGTGAATGCCTGGTTTGCTGAGCGCGTCCACTCCATCCAGACATCTGCCTCTAAAGAAAATCCTGCACAGCAGCGAGCCCCCCAGTCCTCCACAGACTCCAGCCCCCAATCTGCCTCAACTATCCTCCCACCTAACATAAGCCACCTGGACAACCGCTGCCCATCCCCAGTCCCCAGCCCAGCCCCCGGCACCCCGACTCGCAAAATCTCTGCATCCGAGTTTGACCGCCCACTCAGACCCATCGTGGTTAAAGACTCTGAGGGCTCTCTGACGTTTCTGAGTGACGCTGACCGTGAAAGTGTCCCTCTGCGGGGCTCAGTGATGGGTgacggtagtgttggtgggggaGGTAATGGAGGTGGATGCAACGGGGCAGGCAGTGGCAGCGGTGGGGACCGCTGCACCAGGCTGCTGGAGCTGGTGAAGGACGTGTCAAGTCATCTGGATGTGACAGCACTCTGCCACAAGATCTTTCTCCACATCAATGAGCTGATCGCTGCAGACCGCTACTCACTCTTCCTGGTGGGCGAGGACAGCTCCAACAGGAAGTTCTTGGTCAGCCGTCTGTTTGACGTTGCGGAGGGATCCACGCTGGAGGAGTCCTCCAGTAGCTGCATTCGGCTGGAGTGGAACAAAGGCATTGTGGGACATGTAGCCGCCACGGGACAACCGCTCAATATCAGGAACGCTTACGAGGACCCAAGGTTCAATGCTGAGGTAGACCTGGTCACAGGTTACAAAACCCAGAGTATCCTTTGCCTTCCCATCAAGAACCACAGAGACGAGGTAGTTGGAGTGGCTCAGgctattaataaaaaatgtggGGAGGACAGTGCCTTCACTGAACAGGATGAAAAGGACTTCTCAGCTTATTTGGCCTTTTCAGGCATTGTCCTGCACAACGCTCAGCTCTATGAGACATCGCAGCTGGAAAACAGACGCAATCAGgtgctGTTGGACCTGGCCAGTCTGATCTTTGAGGAGCAGCAATGTCTGGAGGTTTTACTGAGAAAGATAGCAGGAACCATGCTGTCCTTTATGCAGGCCCAAGCCTGTACAGTCTTCATTGCTGATGAAGACTCCATgAACTCCTTCTCCAGTGTCTTTCACATGGAATATGAAGAGCTGGGGGAAGTCCTAGACGCCCCCAAAAGGGACTGTGATGTCAGTCAGATTAACTACATGTACGCCCAGTATGTTAAAAACACCATGCAGCCTCTCAACATTGCAGACGTCACCAAGGACCAACGGTTCCCTTGGACAAGGGAAAACCCAGATCACACCAGCAACCAGATAAAGAGTTTGCTCTGCACTCCCATCAGAAATGGCAAGAAGGACAAAGTCATAGgTGTATGTCAGTTGGTGAACAAGATGGACGAAGCATCAGGCAGTGTGAAAGCCTTCAACAGGAACGATGAGCAGTTCCTGGAGGCATTTGCCATCTTCTGTGGTCTCGGCATCCAGAACACACAGATGTACGAAACAGTGGAGAGAGCCATGGCCAAGCAAGAAGTCACTCTGGAGGTCTTGTCATATCACGCCTCTGCTGCAGATGAAGAATCGCAGGAACTCCAGgtAGCCACAGTGCCGTCAGCCCAGTCGTTGCGTCTCCTGGACTTCAGCTTCAGTGACTTTGACTTGTCCGACACGGAAACCACGCTGGGTACTATTCGTATGTTTGTCGACCTCAACCTGGTCCAAAACTTTCAGATGAAGTACACGaattTACTCAAGTGGATTCTAAGTGTGAAGAAGAACTACAGGAAGAATGTGGCCTATCACAACTGGAGGCATGCCTTCAACACCGCCCAGAGCATGTTCACCCTCCTCAAGTCAGGACGCTTACAGAATAACCTGAGCGATCTGGAGGTCTTGGCTCTGATGATTGCCACTCTCTGCCACGATCTGGACCACAGAGGTGTCAACAACTCCTACATACAGAGGAGTGACCATCCACTGGCCCAGCTCTACTGCCACTCCACCATGGAGCATCACCACTTCGACCAGTGCCTCATGATCCTCAACAGCTCTggaAACCAGATCCTGAGCGGTCTCTCCCTGGACGAGTACAAAGCCACTCTGAAGATGATCGAGAGGGCTATTCTGGCCACTGACCTGGCCCTGTATATGAAgaggCGTGGTGAGTTCTTTGAGCTCACCAAGAACAGCCAGTTTGTTTGGGAGGACGAAAATCACAGAGAGTTACTGAGGTCAATGCTGATGACTGCATGTGACATCTCAGCCATCACCAAGCCCTGGCCAGTGCAAAAAAGGATTGCGGAGCTAGTAGCCACTGAGTTCTTCGAACAGGGGGATAAGGAGAGACAAGAGCTGAACATTGAGCCCAGTGACCTGATGAATCGTGAGAAAAGAGATAAGATTCCCAGCATGCAGGTGTCCTTCATTGATGCTATCTGCATTCAGTTATATGAGACATTGGCTGGCATGTCGGAGTATTGCTCCCCGTTGTTGGAAGGATGTCAGATAAACCGGCAGCACTGGAAGCGTTTGGCTGAGGAGTGTGAGAAAGGGGCTGGTTAATGGCATGGTGTGATCCCAACC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189826 lncRNA downstream 2026 2673523 ~ 2676919 (-) True G140747
TU189801 lncRNA downstream 79712 2597834 ~ 2599233 (-) False arsj
TU189780 lncRNA downstream 220766 2454066 ~ 2458179 (-) False camk2d1
TU189788 lncRNA downstream 234349 2427912 ~ 2444596 (-) False G140710
TU189844 lncRNA upstream 53265 2822870 ~ 2824231 (-) True G140761
TU189845 lncRNA upstream 54708 2824313 ~ 2824618 (-) True G140762
XR_005641447.1 lncRNA upstream 139025 2908630 ~ 2910625 (-) True LOC120572441
TU189918 lncRNA upstream 369575 3139180 ~ 3140180 (-) False LOC120573530
TU189966 lncRNA upstream 383294 3152899 ~ 3153336 (-) True G140842
XM_039821280.1 mRNA downstream 56845 2598346 ~ 2622100 (-) True arsj
XM_039821758.1 mRNA downstream 105462 2454067 ~ 2573483 (-) False camk2d1
XM_039822857.1 mRNA upstream 42950 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039823055.1 mRNA upstream 347629 3117234 ~ 3128616 (-) True c14h4orf54
XM_039823321.1 mRNA upstream 369516 3139121 ~ 3143189 (-) True LOC120573530
XM_039823056.1 mRNA upstream 397263 3166868 ~ 3252975 (-) True focad
XM_039823625.1 mRNA upstream 685915 3455520 ~ 3457848 (-) True LOC120573709
TU189682 other downstream 620754 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2227275 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2251461 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2259939 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2261864 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1385319 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1505046 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1505046 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1505046 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1505046 4274651 ~ 4275274 (-) False G141027

Expression Profile