RNA id: XM_039822974.1


Basic Information

Item Value
RNA id XM_039822974.1
length 3245
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC120573313
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5213138 ~ 5244957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGCATCTGTACTCAGGTCATTTTTGACCACAGAAGAAGAGACACAGCGATATCAACAGGGGAAGCTCACATATAAGGAAGTGCAAAGTGCCTTATATCCCAGCTCGGTGAACCCCTTCAATCTGAACACAAGACGATGGCTGATAAAGTGGCTGACTTTCCCAGTGGCCCGCTGGATATCTACAGGAACAAAGCCTCTTTCAACTGGAAGGACATGCTCTGCTTCTTAGACGGAGAGGAAATCATTGCATTCAAGCAACATGTGTTCAAGACACTTGAGAATGACCCTTTGTTTGCACGTCAGCCCGGTGAAGACGTCCCTCTCGCGAAAATGAGAGAGCTGACCTTCTTCAGGTTAAAGCAGCTCATCCGCTACAACTTTCTGACAAAAGAAGAGGCGATGGCTAACCCCTGGAAGGCTGTGACTCTCAATAGTTGCCTGGGCATGTATGACTGTTCCTTGGCGGCCAAGTACTTTCTCAACAAAGAGATTTATGGATCAACTATTGGAAACTTAGGATCAGGGAGACACAGCAACTATGTTGAAAACATTCGAGACATGACGATGTTTGGATGCTTTGGAATGACTGAGCTGAGCCACGGCAGCAACACCAGAGCCATGAGGACCACAGCAACATATGACCCCTCCACCCAGGAGTTTGTGATCAACTCTCCTGACTTTGAGGCCGCCAAGTTCTGGGTGGGGAACATGGGTAAGACTGCGACCCACACTGTGGTGTTCGCTCAGCTCTACACGCCTGACCAGGTGTGCCACGACCTGCACTCTTTTGTTGTGCCGCTGAGAGATCCCAAGACCCTGCTAGCTCTGCCTGGTGTGCTGGTTGGAGACATGGGCAAGAAGCTGGGGCAGAACGGACTGGATAATGGGTTTGCTATGTTTCATAATGTGAGGATCCCTCGGGAGAATCTGCTGAATAAGACGGGAGATGTTACTCCTGATGGTTGCTACGTTACACAAATTAAGGACCCCAACAAGCGTCTCGGGGAGTCTCTGGGTGCCCTGTCAGTTGGCAGGGTGTCTATCACCAGGATGGCTTTGGTCAACCTGAAGCTGGCTCTGATTGTCGCCATCCGCTTCTCATCCACCAGGAGACAGTTTGGACccaaaaacacagaggagaTTCCTGTTTTGGAGTACCAGTTACAGCAATGGCGTCTGATCCCGTACCTGGCAGCAGCGTATGCTCTTGAACACTTCTCCAAATCCATCTTCATGAACTTTTTTGAGTTCCAGATTGGACAGATGATGAGGGagaagagtgacagacaaGCAGAGATGGGCAGGGAGATCCATGCTATAGCATCCTCTAGTAAACCGCTGGGCTCATGGATTGCTCAGAGAGGGATTCAGGAGTGTAGGGAGGCCTGTGGTGGACATGGATACCTGGCCATGAACCGGCTGGGTGATCTGCGTAATGACAATGACCCAAACTGCACATATGAAGGAGACAACAACGTCTTGCTGCAACAGACCAGCAACTACCTGCTCAGCTGGCTCCATGCTAAACACCGCGATGGTGTGCGCATTCGGTCTCCTCTTCACACTGTGGATTTCCTGGATGATTCCCACAAGATCCTGGAAAGCAGGTTCACAGCAAGAATGATGGAGGAGTGTATGGACTCTGCAGTGCCACTGGCAGCCTATAAGTGGCTGGTGTGTTTCCTGCTGGAAGAGAGCCAGAAGAGGCTGGAGCAGGAGATGGCCTCGGGAAAGGAGGAGTTTGAGGCCCGTAACAACAGCcaggtctACCACTGTCGCTCCCTGGCCATCGCCTACATAGAACACAACTGCCTCCAGAGGTTTCATGAGCTGACTACTGATACGGACACACCAGCTGGTCTCAGACCTGTACTAAGCAAGCTGTGTGCCCTGTATGGGCTGTGGAGCCTCAGCAACCACATGGCCACACTCTACCAGGGTAATTACTTGAGTGGAAGGAAACCCACAGACTTTGTCCAGATGGCCATTCTCACTCTCTGCTCCCAGCTGAAGGATGATGCAGTAGCATTGGTGGATGTTTTGGCACCTACTGATTTCATTCTCAACTCACCTATTGGCAATGCTGATGGACAGCTTTACAAGAACCTGTGGTCGACAGTGATGCAGGGCAGCCAGGTGCTGGAACGGCCTTCCTGGTGGAAAGAGTTCTGCTCAGACAAGCCGGTGGTCGGATCCCTCCGTCCAAAACTCTAGAACCAACTCAACGACCTCCCTCTACAACCCTGGACATGTGTCTGGAGTGTCCACATTCTAACTCTGTAATTCTAAGTGCAATTTAGAATGTAATGTCCATACACACAACATATTGCCAAAAAAGTGTCCAAAATGTTGTATACAGAGTACCTTATCAACTGTTTATTATGAAACGCTGGAATCCTGTGCACTCTTTAGAACTCTTGATTCCTGGTCCGACGctaaacaaatcaaaaagaCTTCGACACACTTATAGACACATGTACTACAAATGAACACCCATAGGAAAGAACAGATGTGACACAAAAAAGCGTTAAGAACTTTAAACTTACATTAGTTAATTTCTATTGAATGACCTACTAAACAAACATCCAGCAGGGACACATGCACAGCTAACAGTTTGCAGCTGTAGCTGACAAGCTAACTAGCAAGTAGCAGCTTAATAGGTCCTAGGCCTAAAAAAAGGCTTAAAAGGGTTGAAGTGCTGCTActattttggagccagaagtgaccatatctGGACAAAACGATGGAGCTGGTTAGGATGACGCGGCTAAGCCAGTGTTTCAGTGGCACTATGCTAAAAAAGGGAAAATCGCAGATTTTCAACCATTATGACCCgagaacctgaaaattagcatgatatgggaccattaaaaactttttttaaattttaacatTGGTCCATTAGAGGCTAAATGATGCTTATTCTTCAACACACTGTCTGGCCTTAGCTTATAAGCTAAACTgaattatacattttaataatgcaATAATGTAATTTTTGCATTATTTAAAGTAGCAAGGATTAAACTAGCAAGGATTCCAGTGCAGctttgtttgttatattttaaaaatcattGGTATGGCCAAACTGAGGATCATGACAAGTAGGCTAAATAGCAACCAAGGACTCCTAGTTAACACAATGTAACTTTGAAGTGTTAAATGATCTTTATTGTATTCACAAGAACTTTTGGCCCGCCTTATTgtcgctttttccaacattctttccaccatttctgaca

Function

GO: NA

KEGG:

id description
K00232 E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190523 lncRNA downstream 4678 5208237 ~ 5208460 (-) True G141259
TU190491 lncRNA downstream 134922 5077628 ~ 5078216 (-) True G141233
TU190482 lncRNA downstream 176941 5035502 ~ 5036197 (-) True G141224
TU190480 lncRNA downstream 190053 5022593 ~ 5023085 (-) True G141222
TU190465 lncRNA downstream 265159 4944049 ~ 4947979 (-) True G141214
TU190665 lncRNA upstream 207335 5452292 ~ 5475138 (-) False nat16
TU190676 lncRNA upstream 315074 5560031 ~ 5564384 (-) False cd99l2
TU190699 lncRNA upstream 339205 5584162 ~ 5584526 (-) True G141394
TU190724 lncRNA upstream 466477 5711434 ~ 5711716 (-) True G141416
TU190757 lncRNA upstream 532826 5777783 ~ 5829468 (-) False G141439
XM_039822976.1 mRNA downstream 93811 5114994 ~ 5119327 (-) True znf16l
XM_039823408.1 mRNA downstream 128747 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA downstream 128747 5038118 ~ 5084391 (-) True sstr1b
XM_039821483.1 mRNA downstream 383976 4793478 ~ 4829162 (-) False peli3
XM_039822981.1 mRNA upstream 74840 5319797 ~ 5335717 (-) False LOC120573316
XM_039822979.1 mRNA upstream 74840 5319797 ~ 5335711 (-) False LOC120573316
XM_039822978.1 mRNA upstream 74840 5319797 ~ 5335711 (-) False LOC120573316
XM_039822980.1 mRNA upstream 74840 5319797 ~ 5335711 (-) True LOC120573316
XM_039821607.1 mRNA upstream 173516 5418473 ~ 5423102 (-) False LOC120572332
TU190492 other downstream 113056 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 253133 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 548940 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 552027 4660621 ~ 4661111 (-) True G141159
TU190197 other downstream 937864 4274651 ~ 4275274 (-) False G141027
TU190708 other upstream 352001 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 498602 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 498602 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 498602 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 532826 5777783 ~ 5843146 (-) True G141439

Expression Profile