RNA id: XM_039823026.1


Basic Information

Item Value
RNA id XM_039823026.1
length 4245
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC120573338
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37210060 ~ 37236516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGtgtctggaggaggaggaggaggaggaggaggacgtcTCTCTGACCTCATCTGGACGGGACTTTAACAGGAAACCATGATGAAGGCAGTGGACCTTTTCAACACTCTGGAAGATTTAAAAGAAGATGAATTTAAGACATTCAAATGGTATCTGCAGCAAGATATCCTGGAAGGTTACCAAAGCATCAAAGAGTCCAATCTGGAGAATGCAGAAAGGCAGGACACAGTGGATGTGATGGTGAATACCTATCAGCTTCATGGAGCTCTGAAGGTGACCAAGAAAGTTTTAGAGATGATCAACAGGAATGATCTAGTGCAGAGTCTGCCAGACACAAACTCAAGACCAGAAGAGTCAGTGGATGTCAGTGATTTTGGAAAGACTTCAGAGAACAGAGGAACTCCCTCCTCTCAGAGCAAAGTTGATGTTGAAGAAACTTCAGGGAACAGAGGaccttcctctcctcacactgAAGCTGAAACTCAGAGGGGAGCAGGAAGCCCAGCAGTCACCGCCCATCATGGAGGTGTCGTCAGCACACCTCAGTTTACAAATGTGAAGGCAGAGAATATAACGCTTAATGTCAACAATTTCAACACAAATGtCATGTCTCCTGACAGGACAGATGAGACGAAAGCCAATTCTCCCAAAACCGaagACGGGATGGTACCAGTACCAAAGCCAGCACAGCACATCTCAAAATACCAAAAACAGATTCAGTCAAACTTCATAGACCGTTGCAAGCAACAAAAAGAAGGATTGACGGAGGTGAAACGACCTTTGGATAAGATGTACACACATCTGACTGTCACAGCTGGGGGTGACATACACATCAACAGACAGCATGAGGTCCGGCAGATTGAGACAGTGAGACCAGCAGATACAGAGACAACAATTAAACCTTGTGAAATGTTCAAACCCCCCTCTGAAGAAGACCGCCCCATAAGAACAGTGCTGACCAAGGGAATAGCAGGAATTGGAAAAACATTTCTTGTGAACAAGTTTTTGTTGGACTGGGCTGAAGGAAGAGCCAATCAAGATGTGCATCTCGTTTTCCCCTTCACCTTCCGCCAGCTGAATTCATGCAAGGAGAATGTATGTTTGGCAGACCTCATTCATGAATGTATCTGGGAGACCAAAGACATCAAGAAAGAAGCTCTTAATCATATCTTTACAGAGCTGCAGTCAACAGGAAACACCAACTTTGACAAGAGTGAATTCAaacttctgtttgttttggacGGACTGGATGAGAGCCGCCTTGATATGGACTGCTCTACCAATAAAATCCATGCAGGTAAATTTGACGTGACAGAGCCGACCCCAGTGGACAAGCTGCTGATGAACCTCATCAAGAAgaaactgcttccctctgctcgcatctggataaccacacgacctgcagcagccaatcagatccatTCTGACTTTGTAGACATCACAACAGgggtcagagggttcactgacccacagaaggaggagtactttaAGAATAGATTCAGAGATCAGGAGCAGGCtggcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaagAAGTAATAAAaaccagagagggaggggagctgcccaagaccctgactgagatgtatgCCAAATTCCTGCTGTTTCAGATTCATCAGACAACGGAGAAGTATGACCCAGAAAAGTGCATTCAGTACATTGAGTCATTAGCAAAATTGGCTTACCATCAGTTGGAAAagggcaacctgatcttctataagaaaGATCTAGAAGAGAGTGGCATTAATGTCAGTGGAGCCTCGGTTtgctcaggagtgttcacagagatcttcaaAGAGGAGCGTGGGAGGAAGAATGAGGAAGACAAGATGTTTAGCTtcgtccatctgagtgttcaagagtttctggctgctcttcatgtagAAAGGGCAGTAATTAAAAGAAACAAGAATGTGATGTCTGAGCCAGGGCAAAGTTTCGTCAAAAAAGTGAGGGAAGTTTTCAGCAGATCATCTACGACAAAGGTCCACAGGTTTGCTATTgacaaggccttacagagtccaaacggacacctggacttgttcctccgcttcctcctgggtctttcactggAAACCAATCAGAAACATTTACGAAGtctgctgaaaaaaagaagCTCAGAGACCAATCAAGAAACAGTCaagtacatcaagaagaagatcagtGAGGATCTGTCTCAAgagaaaagcatcaatctgttccactgtctgaatgaactgaatgattgttctctagtggaggagatccaacggtccctgagttcaggaagtctctccacagataaactgtctcttgctcagtggtcagctgtGGTCTTCATCTTACTATCATCAGAAAATgatctggacgtgtttgacctgaagaaatactctgcttcagagcaGGCTCTTCTGAGGTTGCTGCCAGTGGTTAAAGCCTCCAAAAAAGCTCAgctgagtggctgtaacctgtcagagagaagctgtgaagcactgtcctcagttctcagctcagagtcctctagtctgagagagctggacctgggtaacaacaacctgcaggattcaggagggaagctgctTTCTGCTGGACTCGAGATTCCACACTGTAAACTGGAGATTCTCAGgctgagtggctgtaacctgtcagagataagctgtgaagctctgtcctcagttctcagctcagAGTCCtgtagtctgagagagctggacatgagtaacaacaacctgcaggattcaggagggaagctgctTTCTACTGGAGTGAAGAGTCCACCCTGtaaactggagactctcagGCTGACtaactgtaacctgtcagagagaagctgtgaagatctgtcctcagttctcagctcagagtcatctagtctgagagagctggacctgagcaaCAACGAACTcaaggattcaggagggaagctgctTTCTAATGGagtgaagagtccacactgtaaaCTTGAAAATCTAAGtttgtcaggctgtctgatcacAGAGGAAGGCTGTACTTCTCTGGCTTCAGCTCTGAaatccaacccctcccatctgagagtgctggacctgagctacaatcatccaggagactcgGGAGTGAAGCTGCTTTCAGCTAGACAGGAGGatccacactgcagactggacaCTCTAAGGCTGGACCATTGTGGAGAGCAGTGGCTGAAACCTGGTCTGAGGAAATATTCCTGTCaactcacactggacacaaacacagtaaacagaaaactcaaactgtctgacaacaacaggaaggtgatacgtgtggaggaggatcagccatatcctgatcgtccagagaggtttgactacTGGTCTCAGCTACTGTGTaaagatggtctgactggtcgctgttactgggaggttgagaggagaagaagggttaatatatcagtgagttacagaggaatcaggaggagaggaaacagtagAGACTGTGAGTTTGGAggtaatgatcagtcctggagtctgaggTGCTCTAATGACCGTTACTCTGTCCGTCACAATAACATCAGAACATCGATCgtttcttcctctgtctctagtagagtagcagtgtatgtggactgtcctgctggctatctgtccttctacacagtctcctctgactcacagACCCACCTgtacaccttcaacaccacattcactcaaccTCTCTATCCAGGGTTTGGGTTCTGGTCTCGtgcctcagtgtctctgtgtcgtgtgtaggacggagagtctcctcctgtttaGTCTCCTCCTATTTCTCACAgctgatcagttgagtctgtacaGGACCACACTTACATACATATTGGTGATGGGAACAAAGAAcgtataaatgtaaatggactgtttttatatagcacttttctagtcttatcgactactcaaagctcttttacatagtacaggaaccattcaccattcatacactgtggccgaggctgccgtacaaggtgccacctgctcatcagataaacactcacacacatttacactccgatgcccAGCATCTGTTCCAAACAGGCTAGTTTCTGATTGTTTCCCAGTATTATTTTTCCCCACAACTTTATTTAACCAAGCACGGTTCAATCAGGCGCGTCTCGActatcagaaataatctcagaaaacctttatttaaaaaagactcaaatgttttgactaaaatatCTTGAGTCCTCTTTtaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202309 lncRNA upstream 61564 37146083 ~ 37148496 (+) True G149573
TU202370 lncRNA upstream 80447 37129045 ~ 37129613 (+) True G149626
TU202321 lncRNA upstream 125746 37009157 ~ 37084314 (+) True G149585
TU202351 lncRNA upstream 152713 37041143 ~ 37057347 (+) True G149608
TU202348 lncRNA upstream 176006 37016158 ~ 37034054 (+) False G149606
TU202390 lncRNA downstream 32733 37269249 ~ 37269996 (+) True G149646
TU202392 lncRNA downstream 32733 37269249 ~ 37269629 (+) False G149646
TU202391 lncRNA downstream 32980 37269496 ~ 37269996 (+) False G149646
TU202393 lncRNA downstream 35378 37271894 ~ 37272492 (+) True G149647
TU202402 lncRNA downstream 113951 37350467 ~ 37350876 (+) True G149656
XM_039823029.1 mRNA upstream 64884 37126197 ~ 37145176 (+) True LOC120573342
XM_039821963.1 mRNA upstream 88973 37101576 ~ 37121087 (+) True LOC120572645
XM_039823028.1 mRNA upstream 108461 37096912 ~ 37101599 (+) True LOC120573341
XM_039821959.1 mRNA upstream 489702 36718486 ~ 36720358 (+) True LOC120572642
XM_039822417.1 mRNA upstream 552154 36651436 ~ 36657906 (+) False LOC120572900
XM_039821966.1 mRNA downstream 33774 37270290 ~ 37282392 (+) True LOC120572648
XM_039823027.1 mRNA downstream 150532 37387048 ~ 37412697 (+) True LOC120573339
XM_039821969.1 mRNA downstream 237952 37474468 ~ 37502157 (+) True LOC120572651
XM_039823031.1 mRNA downstream 296759 37533275 ~ 37558146 (+) True LOC120573344
XM_039823030.1 mRNA downstream 296759 37533275 ~ 37558146 (+) False LOC120573344
TU202320 other upstream 271918 36937406 ~ 36938142 (+) True G149584
TU201846 other upstream 866482 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 866582 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 947688 36122706 ~ 36262372 (+) False G149187
XR_005641500.1 other upstream 1087342 36117298 ~ 36122718 (+) False LOC120572849
TU202405 other downstream 114559 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 331397 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 440479 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 440479 37676995 ~ 37681109 (+) False G149843
TU202671 other downstream 440479 37676995 ~ 37681109 (+) False G149843

Expression Profile