RNA id: XM_039823029.1


Basic Information

Item Value
RNA id XM_039823029.1
length 2398
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC120573342
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37126197 ~ 37145176 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctctttctctctctccctctctctctgtctgtcaaaTGCTTGCTCAGTGTGCAGCCGACCGAGACCGGAGGGGGAgggtctctccctccctttctctctctccctttctctctctgtctctctctctgtagagTCCAGAGGACGGACGCTTGCTTGCTTTAATTTAGCAGCTTCATATATTCGTTCCCCTGTCTCGTTCCCTCTGTCTGTCCGgtgattttgttttctctgcCTGTGGACAGACGGTCGCCCTTCATCACCTTCACCTCGTCTCCCTCGTCCTCCAGCTGTGTGTCGACCGACGACGGGATGACAGCAGAGACTAACagaaagttgtgtgtgtgtgtgtcccgctCATGACTTCTCTCCATCGTCGCCATAGTGACCGCGACCTTGGTGGCAGTGGCGGTACTTGACAGTTGTCAGTGGACGTTAGTGGACTGTTGTTCTGCCTGCCGGGGGTAGAGCTGTGTTAACATTCACATGTTGTATTTCATGTCTGTGGGGAAACTCTGCACAAAATCTGTGGAAATTCTGCTAAAAAACTGCACAAAATTCCCCCCAAATAATCTACGGATAACCTAAGGAAAATTCTGCacaaaaactgaagaaattctgcacaaaaactgaagaaattCTGCACAAAAACTGAGGAAATTCTGCGCAAAAACGGAAGAAATTCTGCACAAAAACTGAGGAaattttgcacaaaactctGAGGAATTTCTGCACAAAAACTGAGGAAATTTTGCACAAAAATTGAGGAATTTCTGCACAAATACTGAGGAAAGTCTGCACAAAATCTGAAGATATTCTGCACAAAATCTTAGGAATTTCTCCACAAAAACTGAGAAAATTTTGCATACAAATCTGCAAAAAAACTGCACAAAATTCCCCCAAATAATCTACGGATAACCTGAGGAAAATTCTGCACAAAACCTGAAGAAATTCTGCACAAAACCTGAAGAAATTCTGTGCAAAAACTGAGGAAATTCTGTGGATTTCTGCGTCTGCAGATACCGCGTGGCcctgttttgtatatatataaatatatagtggCCTTGTTACCGTAGCGACCAGGATGCAGGTGTCCATAGCGTGTAACGTTGGCGGCGGCGGTGGCGTTGGCGGGGGCAGCAGTGAGCACCAGCTGAAGGAGCGTCGGGCGGCGATGAACACAAGCGCCCCCTCCTGTCAGGTAAAGGTGAAGGCGGAGCCGGAGAACAGACTCACCCTGTTAGGCCACGCCCACATGAAGGAGGCGCTCGGTCGCCATAGCAACATGAAGTACagGAATCTTGGGAAATCTGGACTGAGAGTGTCCTGCTTAGGCCTGGGAACATGGGTGACGTTTGGCTCGCAGATCTCTGACGAGatggcGGAGAGTGTGATGTCGGTGGCGTACGACAGTGGAGTGAACTTGTTCGACACGGCTGAGGTCTACGCCTCAGGGagggCAGAGAGGACTCTGGGAAACATCCTGAAGAAGAAAGGATGGAGTTTTGGTTCGTTATGTGGTCAGCTCTACTGGGGAGGACAggCGGAGACAGAGCGAGGGTTGTCCCGGAAACACATCATCGAAGgtCTGCGTGGCTCTCTCTCCAGGTTACAGTTGGACTACGTTGACATTGTCTTCGCAAACCGGAGTGACGTCAACGCACCGATGGAGGaggTGGTTCGAGCGATGACCTTTGTGATCGAGCAGGGAATGGCCATGTACTGGGGAACATCACGCTGGAACGCTGTGGAGATCATgGAGGCGTACTCGGTGGCGCGGCAGTTTAATCTGGTTCCTCCAGTGTGTGAGCAGGCCGAGTATCATTACTTCCAAAGAGACAAAGTAGAGCTGCAGCTACCAGAACTTTACCACAAGAtagGGGTCGGAGCCGTGACCTGGTCCCCACTGGCCTGTGGCCTGCTGACGGGGAAATACAACCAGGGAGTCCCGGAGACATCCAGAGCTGCCAtgaagggctaTGATTGGCTGAAGGAGCGTCTCTGCAGTGATGAGGGGAAGAAGCAGCTGAGTAAGATCAGAGAGCTCCACCAGCTGGCCGACAGACTCAACTGCACCGCTGCTCAGCTCGCCATCGcgTGGTGTCTCCGTTCTGAAGGAGTCAGTTCGGTTCTTCTCGGAGTCTCGAACACGGAGCAGCTGCTGGAGAACCTCGGCTCCATCACCGTCCTGTCTCAGCTGACTCCGCCCCTCGTCGCCGAGATGGACGCGTTGCTCGGCAACAAGCCACGAAACAGCAAGGAGGCGGCAAAACGCTGAAGACTTTCAACACaactttatttattcttcagggaCGTTCTCATTGCCATGGAGACAGTGAGACTGTAACCATCAGAAGTATTTATTCTtctattaataaatatatataaatatatatgaa

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202321 lncRNA upstream 41883 37009157 ~ 37084314 (+) True G149585
TU202351 lncRNA upstream 68850 37041143 ~ 37057347 (+) True G149608
TU202348 lncRNA upstream 92143 37016158 ~ 37034054 (+) False G149606
TU202343 lncRNA upstream 94797 37016158 ~ 37031400 (+) False G149606
TU202344 lncRNA upstream 105511 37016158 ~ 37020686 (+) True G149606
TU202309 lncRNA downstream 907 37146083 ~ 37148496 (+) True G149573
TU202390 lncRNA downstream 124073 37269249 ~ 37269996 (+) True G149646
TU202392 lncRNA downstream 124073 37269249 ~ 37269629 (+) False G149646
TU202391 lncRNA downstream 124320 37269496 ~ 37269996 (+) False G149646
TU202393 lncRNA downstream 126718 37271894 ~ 37272492 (+) True G149647
XM_039821963.1 mRNA upstream 5110 37101576 ~ 37121087 (+) True LOC120572645
XM_039823028.1 mRNA upstream 24598 37096912 ~ 37101599 (+) True LOC120573341
XM_039821959.1 mRNA upstream 405839 36718486 ~ 36720358 (+) True LOC120572642
XM_039822416.1 mRNA upstream 468291 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA upstream 468291 36651436 ~ 36657906 (+) False LOC120572900
XM_039823026.1 mRNA downstream 64884 37210060 ~ 37236516 (+) True LOC120573338
XM_039821966.1 mRNA downstream 125114 37270290 ~ 37282392 (+) True LOC120572648
XM_039823027.1 mRNA downstream 241872 37387048 ~ 37412697 (+) True LOC120573339
XM_039821969.1 mRNA downstream 329292 37474468 ~ 37502157 (+) True LOC120572651
XM_039823031.1 mRNA downstream 388099 37533275 ~ 37558146 (+) True LOC120573344
TU202320 other upstream 188055 36937406 ~ 36938142 (+) True G149584
TU201846 other upstream 782619 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 782719 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 863825 36122706 ~ 36262372 (+) False G149187
XR_005641500.1 other upstream 1003479 36117298 ~ 36122718 (+) False LOC120572849
TU202405 other downstream 205899 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 422737 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 531819 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 531819 37676995 ~ 37681109 (+) False G149843
TU202671 other downstream 531819 37676995 ~ 37681109 (+) False G149843

Expression Profile