RNA id: XM_039823031.1


Basic Information

Item Value
RNA id XM_039823031.1
length 3615
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120573344
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37533275 ~ 37558146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacagcagcagcGTCTGTCAGTgtctgcagacagacaaagaggaggaggacgtCTCTCTGACCTCACCTGGACGGGACTTTAACAGGTGAGCAGCCTGACAGCAGGAAACCATGATGACGGCAGTGGAACTTTTCAACACTCTGGAGGATTTAGGAGAAGATGAATTTAAGAAATTCAAATGGCATCTGCAGCAAGACATCCTGGAAGGCTACCAAAGCATCAAAGTGTCCATGTTGGAGAAGAACGCAGAAAGGCAGGACACAGTGACTGTGATGGTGAAGACCTATCACCTTCATGGAGCTCTGAAGGTGACCAAGAAGGTTTTAGAGATGATCAACAGGAATGATCTAGTGCAGAGTCTGCCAGACACCAGCTCAGGACCAGAAGATTCAGTGGATGTAAGTGATGTTGGAGAGACTTCACAGAACAGAGGAACTCCCTCTTCTCAGAGCAAAGATGGAATGGTTCCAGAACCAAAGCCAGCACGGCACATCTCAAAATACCAAGAAAAGATTCAGCCAAACTTCAAATACTGTTACAACCAACTACGAGAAGGGTTGACGGAGGTGAAACGACCTCTGGATAAGATGTACACACATCTGTCTGTCACAGCTGTGGGTGACgtacacagcaacacacagcaTGAGACCAGGCAGATTGAGAAAGTGAAGCCAGTAGATACAGAGACAACAATTAAACCTTGTGACATGTTCAAACACCCCTCTGGAGAAGACAGCTCCATAAGAACAGTGCTGACCAAGGGAATCGCAGGAATTGGAAAAACATTTCTTGTGCACAAGTTTGTGTTGGACTGGGCTGAAGGAAGAGCCAATCAAGATGTGCATCTTGTTTTCCCCTTCACCTTCCGTGAGCTGAATTCATGGAAGGGAGAGAAAGTATGTTTGGCAGAGCTCATTCATGAATGTATCTGGGAGACCAAAGACATCAAGAAAAAAGCTCTTAATCACATCTTTACAGAGCTGCAGTCAACAGGAAACACCAACTTTGACGAGAGTGAATtcaaacttttgtttgttttggacgGACTGGATGAGAGCCGCCTTGATCTGGACTGCTCTACCAATACAAGAAAGGCAGTTCAAATTGATGTGACAGCGCCGACCAAAGTGGACGATCTGCTGACGAACCTCATCAAGAAgaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccatTCTGACTTTGTAGACATCacgacagaggtcagagggttctCCGACttacagaaggaggagtactttaAGAATAGATTCAGAGATCACGAGCAGGCcggcagaatcatctcccacattaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctagataaattattaaaaaccagagagggaggagagctgcccaagaccctgactgaaaTGTATGGAGAATTCCTGCTGTTTCAGATTCATCAGACAAAGGAGAAGTGTGACCCAAAAGAGTATGACTCAGAAAAGTGCATTCAGTCCATTGAGTCATTAGCAAAACTGGCTTACCATCAGTTGGAAAagggcaacctgatcttctacgAGAAAGATCTCAAAGAGAGTGGCATTAATGTCACTGGAGCTTCGGTGTGCTCTGGAttgttcacagagatcttcaaAGAGGAAATTCGGagaaagaatgacaaaaaaaagatgtttagcttcatccatctgagtgttcaagagtttctggctgctcttcatgtagAGAGGGCAGTAATTAAAAGAAACAAGAACGTGATGTTTGGGCAAAGTTTGAAAACATGGCGAATGGTTTTCAGCAAAAAATCTATGATGTCAAAGGTCCACAGGTTTGCTATTGACAAGGCCTTAGAGAGTCCAAACGGccacctggacttgttccttcgcttcctcctgggtctttcactggAGACCAATCAGGACCTCCTCCAAGACCTGTCTACTGAGACAGGAAGTAGCTCAGAGACCAATCAGGGAACAGTGGAGTACATCAAGGAGaagatcagtgagaatctgtctCCAgagaaaagcatcaatctgttccactgtctgaatgaactgaatgatcgttCTCTAGTGGAGGAGATCCAACGGTCCCTGActtcaggaagtctctcctcAGATAatctgtctcctgctcagtggtcagctctgggcttcatcttactgtcatcagaagaagatctggacgtgtttgacctgaagaaatattctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagtcTCCAAAAAAGCTCTGCTGAGTGGCTGTgatctgtcagagagaagctgtgaagctctgtcctcagttatCAGCTcagagtcctctagtctgagagagctggatctGAGTAACAATGAActgaaggattcaggagtgaagctgctttCTACTGGAGTGAAGAGTCCACAATGtaaactggagactctcagtttgtcaggctgtctgatcacagaggaaggctgtacttctctggcctcagctctgagctccaacccctcccatctgagagtgctggacctgagctacaatcatccaggagactcaggagtgaagctgctttCAGCTAGACGGGAGGatccacactgcagactggacaCTCTAAGGCTGGAATATTGTGGAGAGCAGTGGCTGAAACCTGGTCTGAGGAAGTattcctgtcaactcacactggacacaaacacagtgagcagaagactcaaactgtctgacaacaacaggaaggtgacactTGTGTGGGAGGATCagtcatatcctgatcatccagagaggtttgactcctCGTATCcgcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagaCGACAGGAGATGTTtctatatcagtgagttacagaggaatcagcaggAGAGGAAACAGTAATGATGGTGTGTTTGGACATAATGATCACTCCTGGAATCTGAGCCCTGATTATGATGGTTACTGTGTCTGGTACAATAACATAGaaacatccatctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacatctacaccttcaacaccaaattcactcagcctctctatccTGGGTTTGGGTTCTGGTCTCTTcattcctcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttctcacagctgatcagttgagtctgtacaGGATCACACTTACAGACATATTGGTGATGAGAACAAAGACCGTATATTTTTAAGTTGGACTATTGCAAAATATTTTAAGATAAAAAGGGATTTTATGGctgaatttatttaaaataagtctggaatgaatgaatgatttattatttgaaacatgtaaaaacaaaacaattatataaaagaacaaaaacatgatTCACATGAAGgtattttattttggaaattTGGAAGCGGATTACCGCCAAAAAGAAAAGACTGTGTAATCACTATTcatgaacattattatttttatattattctcCTGTTTGTCTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202414 lncRNA upstream 76986 37456058 ~ 37456289 (+) True G149666
TU202408 lncRNA upstream 101440 37410440 ~ 37431835 (+) True G149660
TU202402 lncRNA upstream 182399 37350467 ~ 37350876 (+) True G149656
TU202393 lncRNA upstream 260783 37271894 ~ 37272492 (+) True G149647
TU202391 lncRNA upstream 263279 37269496 ~ 37269996 (+) False G149646
TU202650 lncRNA downstream 74511 37632657 ~ 37632882 (+) True G149833
TU202653 lncRNA downstream 77879 37636025 ~ 37670638 (+) True G149835
TU202654 lncRNA downstream 78054 37636200 ~ 37670638 (+) False G149835
TU202656 lncRNA downstream 78571 37636717 ~ 37637063 (+) False G149836
TU202657 lncRNA downstream 78571 37636717 ~ 37637214 (+) True G149836
XM_039821969.1 mRNA upstream 31118 37474468 ~ 37502157 (+) True LOC120572651
XM_039823027.1 mRNA upstream 120578 37387048 ~ 37412697 (+) True LOC120573339
XM_039821966.1 mRNA upstream 250883 37270290 ~ 37282392 (+) True LOC120572648
XM_039823026.1 mRNA upstream 296759 37210060 ~ 37236516 (+) True LOC120573338
XM_039823029.1 mRNA upstream 388099 37126197 ~ 37145176 (+) True LOC120573342
XM_039823046.1 mRNA downstream 36070 37594216 ~ 37602072 (+) True LOC120573353
XM_039822926.1 mRNA downstream 55632 37613778 ~ 37632587 (+) True eno3
XM_039822927.1 mRNA downstream 55632 37613778 ~ 37632587 (+) False eno3
XM_039822928.1 mRNA downstream 59772 37617918 ~ 37632587 (+) False eno3
XM_039823161.1 mRNA downstream 279839 37837985 ~ 37839036 (+) True LOC120573434
TU202405 other upstream 181431 37351075 ~ 37351844 (+) True G149657
TU202320 other upstream 595133 36937406 ~ 36938142 (+) True G149584
TU201846 other upstream 1189697 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 1189797 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 1270903 36122706 ~ 36262372 (+) False G149187
TU202419 other downstream 9767 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 118849 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 118849 37676995 ~ 37681109 (+) False G149843
TU202671 other downstream 118849 37676995 ~ 37681109 (+) False G149843
TU202698 other downstream 244947 37803093 ~ 37814879 (+) False G149853

Expression Profile