RNA id: XM_039823099.1


Basic Information

Item Value
RNA id XM_039823099.1
length 6197
RNA type mRNA
GC content 0.47
exon number 25
gene id LOC120573389
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38064701 ~ 38106195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTGCACGTCTAACTGGCTAACTATAGTTCCTTCTTccgtgttgtgtttgtgtgtgtggttctgacCCAGGCAGGCCCTTCTCTCTGGGACTCAGTCCTTTCCTTCAGATGGCTCCGAGTAGAGCCAGGTTAATCCTGTCTCTATTCCTGACTGCAGACCAGCTGGAGATCTAATCCAGATCAGACCAATAGAATAAACCCTCCTTCATACCCTCAGACCAACACATCCTCTCAGAACTGAAGGAACATAAAGAAGTAGTCCTGTAGTAACATGGAGATTGGGCTGTGGCCCTGCAGTGTATatctagtatatatatatataatagatatCAATAGAATAAACCCTCCTTCGTACCCTCAGCCGTCTCACTGTTGAACTCAAAAGGTAAAGGTAATATCAGCTCAAACACACAACCAACTGCCTACTTGACTTAATCTGTGACATCACAGAGAGGTGGATGATGTCATCAGCCAGGAAACTTCATGGAGTCTGAGGAAACGACCTCGGAGAGATTCAACCGAAAaggtcacacagacacacacacagactcacacagactCTGAACTCTAAACGAGATTAATTTAAGcctctgactctgtgtgtgtgtgtctctctcgtTCGAGATCATCATCAGCACTTTCTGCAGCGTGGCGTTCATTGaggatttattttctttaatcaaCTGAAACTGATGGTTTTCTTTGGACAGATGAATCTGTGAGACAGAAGGTTTCCAGGATGCAGCTTCCCAGGTGGTTTCCAGGGGCCTGTCTGTGGTTGCTATGCGTCTCAGAGGTCTGGACAGCAACCTTTAAGCTGGCTCTGATTGGTCCGTGGTCATGTGACCCCATGTTCTCCCGGGCGATGCCCTCGTCGGCGGCCAACCTGGCGTTGTCACGGTTACGTAGCGACATGGGTATGAGCCGAGGATACTGGTACGATGTCAAACTGCTGGACGAGAGCTGCTCCGCCTCCAAAGCGCTGACGGATCTCGGGGACATGGAGGGTTACGGCCACGCCTACATCGGGCCCTTTAACCCCGCCCTCTGCCACGCTGCCTCCCTATTCGCTCAGCACTGGGAGGCGGGCCTTGCCTCGCCAGGCTGTCTGGATGCTGATTGGCCGAACCTGCCGCCCATCACGCCGCCCAGCAGGGTGCTGTTCACCGTGCTGCGGTTCTTCCGCTGGGCGCACGTCGCCGTGGTCTCTGCTCCATCCGACCTATGGGAGAGCACCGGACAGGAAGTAGCCTCAGCGCTCCGAGCTCTGGGCCTGCCGATTGGTCCGGTGGTTACCATGGAAACAGAGAGCAAGGGCGGACCTCGGGAGGCGCTCAAAACTATCAGAGAAGCCGacaaggtcaaagTGGTGATAATGTGCATGAGCtccgtcctgattggtggacaGGATCAGGAGGAGCTCCTATTGGCTGCTCTGGACATGGGGATGGTTTCCGACGGTTACATCTTCATTCCGTATGACGCCCTGCTGTACGCCATGCCGTACCAGGACACAGTATTTCCTCAGCTGACCAATAACACAAAGCTTCGTCGCGCCTACAGCTCCGTGCTGACCGTTACCATGGCGTCGGACCAGAGTTTCTACGAAGCTTTTCGTCAGGCTCAAATAACCCGAGAGATTCGCTCTGCTGTGGCTGCTACTGAGgtttctcCGGTCTTTGGGACGATCTTCAACATGGTGTACTTTGTTGCTAAGGCGGTGGAGGAGCGTCGTCAGGCAGGGGGCGGGCACTGGGTGAAAGGTGATCAGCTCGTCCAGTCAAATGGAGGCTTTGATTTCCAGGGCTTCAATCAGGAGTTGTATGGCGGtaaaaatgggcgtggcctGCAGGCCAGGTACGTGGTGTTGGACAGTAACGGCGACCGCTTCGTGCCGACGCACACGCTCGCTCCGACGCACACGGACGGGACGGTCGGGGGTCTGAGACCACTGAGTCACTCCTTCATCTTCCCTGGAGGAAAACCCCCCAAGGCCAGCTTCTGTTGGTTCAGTCCAGAGGAGGCCTGCAGTAGTGGTTTGGGCTCTGTGACAATGTTCTTCATCTTCCTGGTACTCTGCGCTGTGATTGGAACTTTCATCTACTGGTtcagGATTTACAGGAGAAGAGCGAGCACGACCAAACTGGTTCTGACTCTGGACGACATCGTCTTCATCGACACTCAAGTCAGCAAGAAGaAACTGAACGATGAGTCCATCATGAGGAGTCTTCTGGAAATAAATACTCCGATGCGCTCGATCGCTCGAAGTTACATCCTGACGTCACCTGAGAGCTCCAACATCGGAATCCTGGAgGGCGACTGGGTTTGGCTGAAGAAGATCCCCGTTGAAAGGAAGATAACAGCTGTGAATCAAAGCACTCAGAGTCTTTTCAGCCATctgagGGAGATGCGACACGAGAACACCAACCTTTACGTGGGATTGTTCGTGGACTCGGGGATCTTTGCTCTGGTGGTGGAACACTGTCCTCGGGGGAGTCTGGCCGACCTGCTGGCCGACGGAGACATGAGACTTGACTGGATGTTCAAGTCCTCGCTGCTAATGGACCTCATCAAgGGGATGAAGTACCTTCATCTACGAGGGTTGAGTCACGGCCGTCTGAAGTCCACAAACTGTTTAGTCGATGGACGCTTCGTTCTGAAAATCACAGACTATGGACTTCCCATGATCCTTCACTCTGAGAACATCAGCCTTCCCGAGGACCCGCAAGagcTGCTGTGGACGGCTCCAGAGCTCTTGAGGAATCCGGTCCGAGGAGGTTCATTTTCTGGAGACGTTTTCAGTTTCTCCATCATCATACAGGAAGTGATCTCACGAACGCTGCCTTACGCTATGATGGACATGCCTGCCCAGGAGATCGTGGAGCATCTGAAGCATCCCCCCCCTCTCTGCAGACCGATAGTTTCGGTGGATGAAGCTCCGGCTGAGTGTCTCAGTCTGATGAACGAGTGTTGGAGCGAAGATCCGAGTCAGAGGCCCGGCTTCGACCACATCTTCAAACAGTTTCGGGGCATTAACAAAGGGAAGAGGGCAAACATCATTGACTCAATGCTGCGGATGTTGGAGCAGTACAGTTCCAACCTGGAGGACCTGATCAGAGAACGAACAGATGAACTGGAGATTGAGAGACAAAAGACCGATAAGCTGATCGGACAGCTGCTCCCAAAGTCCGTGGCTCAGGCTCTGAAGAAAGGGAAGCCGGTCCAGCCTGAACATTATTCGGACTGCACTCTTTACTTCAGCGACATCGTTGGATTTACAACCATCTCATTTCTCAGTGAACCCATCGAGgtggtcGACCTACTAAACGATCTCTACACGATGTTTGATGCTATCATAGCGCGTCATGACGTCTACAAGGTAGAAACAATCGGAGACGCCTACATGGTGGCTTCAGGTATTCCCAACAGAAACGGGAATCGGCACGCAGGAGAAGTGGCCAACATGTCTCTGGAACTGCTTCACTCGATCGGAGAATTTAAGATCAAACACATGCCAGAGATCAAAGTCAAGATACGCATTGGACTGcactcagGACCAGTGGTGGCAGGTGTTGTTGGTCTCACAATGCCCAGGTATTGTCTGTTTGGAGACACAGTGACCACGGCCTCACTCATGGAATCCTCCGGACTGcCCTACAGGATCCACATCAGTCTGAGCACAGTGAAGGTTCTGACCAGCCTCAAAGCAGGGTACCACATAGAGACCAGAAAGGCCCAGGTGAAAGGAACTGTGGACACGTATTGGCTGATGGGGAGAGACGGCTTCGATAGTCCACTTCCTGTTCCTCCAGACCTCACTGGAGGgtcGGGTCATGGGATCAGTCTGGACGAGGTTCCAGTTGAAAGAAGACAAAAGTTTCTGGACCGACAGAAGATGATAAAGAAatgattacacacacatgcattcacgtgcgcaggcacgcacacacacataaatacacacacaggcacacaatactcacacaggcacacacacagactgttaAAGAATGAATGTTGTCAGATTTTACTACAGTTATCAGTTTATAATAATCAGAACGACCGGCGTTGATCAACTCGGCTAGGCAGCCCAGGCCGAGAGGGGGGTCGGGCCAGGGTTGCTAACAGCTGGGGCAGGAAATGGGAGGTCACAGTAAGCTTTACGCTGGGTTTTCACAGTTAGCTCCAACAACAGCAGagtttaaagctgtagtgcgtaactttatgatattaatgaacgtctgttacattcaagccatagCCAattgagttgctacaaagctaattaagactccacacaactctctctggatttctcagaaGATTATGTTGTCCGGTGACTTTCAGGCACAGAAgattgagtgaagataattacctcttctgaagactccatcatttgtttttaatcctctgtgtcctacTTGGCTGCTtgtaactgtgtggaggagggcgGGGGTGCGGTCATgcaaggcttgtatcatgtggacgctcCGACAGTTGCTGTTGTCATTACTCATgcgggagacagaaactacggaaaatagctttaatttattcCCGTGAGAACAGCGGTGAAAGTTCCTGATTAGGGATGTTCACGATTAACCGTTTAAATGTTAACAGACAATTATTACTATcattcaaacaattcaaaaAACTAGTAAAAAAAGTTtgcattgtaaaataaaaataagattcTTTTGTCTTTGTGAGTAAATCGCTAGTGCTAACATTGCATTAGAAAGTTGTGTTTGAAGGTCCTTTTTCTGCTAAAGTCACGACGACTACCATTACATGACACAGTTCGCTACATGTCTTGCTGTTTCCTGATGCTCTTGTCtaaaatcatctggccaaaggagtacagttgaaaattagccggcttgctaacactggcacatttacagaaatgttgataaatgtgtgttgtcttttataaataaagaataagaataataagAATTGATAAGGACTGACGGGTTTAATTGGCCGTCTGACACCTTGGTAATTTCGCAGCCTATCTGATCGTTGTGGTGCAGATGGGCTCGGACATTTGTCCCGTGGACAGCTGCCAACTTGTACTGGTTGTGAGAACATGCTAACAGTTGGGAAAATGGCTGCAAGTATCCATGACAACGCACTCAACATCTGCAGATGCTAAAAAGAGAAATTAAAACAGTATCCTCCTTGTTTTCTGCTGCACCTGCAATAAATGAAATGAGAGGCTTGGTTTATACTGACAAAGACTCGGGGCTGACCCTGGTAATGTGAAAGAAGTATTAGTcatattgttttagtttttttgtctaAAGTCAAGACAAAGTAATAACATATGACTGTTATTTATGAGAAAACTTCCCATGATGCATTTGATCTCAGCTTTTCTTCATTGTTAGCTGAATATTAAACTAAAGTAGATGTGAGTTTGGCTCTAcagttacttttatttttatttttgttattatggTTCTGATGGTTGGAGGCTAACGGCTGACTGTTGGACCCTAACAGAAGATCCACAGACAACTCAATGTCGTTGATCATTTATTAGCTAACAAGCCTTTAAGATCTGAGGGATACAAGCCCGTCTCAGTTAAAATAttcaatataaaataaagaaataatcaaAGGAAACTTGCAAGCACGATATCTGAAGCCAAGCTTTACGACGATAAAAATCAACTATTAACAACTACTAACTGACAAATTATCAATACTTTTAATGTCAAATTAATTCACAATCCCACAAAGATACTAATTAAACAGATAAATATGTATACATAGATAAATACTCTGGATGTACTGTCTCGCATTTAAATAATAAGTTAATATTTACAGGTTTCATCAATGTACTTTACAGTACACACTGACCTGAGGGATAAAAGCCCAGTCTGACTTGTTTCTTCAGTGATGGAAGCTTTTTGGCTGCAATGTTACCTTGGATACTATAACCTTGTAACTTATTACTTATGAAATGGAactataaaaatatgaaaaatactgtatttaactaccaaataaaagaaaaaatactatCAAAATAAATTAGAACTCAAATTGTGTGTTTAACATAAGATGCAAAAGGCATATGTTACACATGTTAGACATTTAAAGACtattgtttatttgtgtttccTTGTTGTTGTTCTTAAACCTGTCATGTAGAAAATAATTCAATAAAATGTTCAGTTCACAA

Function

GO:

id name namespace
GO:0006182 cGMP biosynthetic process biological_process
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202758 lncRNA upstream 36124 37959920 ~ 38028577 (+) True G149878
TU202772 lncRNA upstream 56291 37975340 ~ 38008410 (+) False G149884
TU202775 lncRNA upstream 56291 37975340 ~ 38008410 (+) True G149884
XR_005641653.1 lncRNA upstream 177162 37885677 ~ 37887539 (+) True LOC120573164
XR_005641652.1 lncRNA upstream 177162 37885689 ~ 37887539 (+) False LOC120573164
TU202797 lncRNA downstream 35669 38141864 ~ 38143226 (+) True G149899
TU202800 lncRNA downstream 46027 38152222 ~ 38155353 (+) True G149902
TU202763 lncRNA downstream 63281 38169476 ~ 38286911 (+) False G149880
TU202766 lncRNA downstream 63281 38169476 ~ 38286911 (+) False G149880
TU202767 lncRNA downstream 65076 38171271 ~ 38292545 (+) True G149881
XM_039823124.1 mRNA upstream 1239 38035815 ~ 38063462 (+) True eif4e2rs1
XM_039823126.1 mRNA upstream 1239 38059023 ~ 38063462 (+) False eif4e2rs1
XM_039822679.1 mRNA upstream 112665 37911219 ~ 37952036 (+) True LOC120573166
XM_039822681.1 mRNA upstream 112665 37911219 ~ 37952036 (+) False LOC120573166
XM_039822680.1 mRNA upstream 114602 37911219 ~ 37950099 (+) False LOC120573166
XM_039823113.1 mRNA downstream 123667 38229862 ~ 38252888 (+) True LOC120573398
XM_039823114.1 mRNA downstream 123667 38229862 ~ 38252888 (+) False LOC120573398
XM_039823128.1 mRNA downstream 241461 38347656 ~ 38352838 (+) False LOC120573406
XM_039823127.1 mRNA downstream 241519 38347714 ~ 38352838 (+) False LOC120573406
XM_039823123.1 mRNA downstream 318682 38424877 ~ 38428658 (+) True LOC120573404
TU202708 other upstream 216125 37843221 ~ 37848576 (+) False G149853
TU202698 other upstream 249822 37803093 ~ 37814879 (+) False G149853
TU202665 other upstream 383592 37676995 ~ 37681109 (+) True G149843
TU202808 other downstream 158242 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other downstream 158242 38264437 ~ 38351833 (+) False LOC120573406
TU202810 other downstream 158242 38264437 ~ 38351833 (+) False LOC120573406
TU202813 other downstream 158242 38264437 ~ 38351833 (+) False LOC120573406
TU202806 other downstream 241369 38347564 ~ 38351833 (+) False LOC120573406

Expression Profile