RNA id: XM_039823123.1


Basic Information

Item Value
RNA id XM_039823123.1
length 816
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120573404
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38424877 ~ 38428658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCAGGTCTACAGAGAGACTCAGACAGGTtcagatgatgatgaagatgatgaagatgatggtgGTCCTGGTCCTCTCCGgtctcctctgtgtctcagCTGACGttcTTCGTATCGATGGCTGTTCAGAGACTGATGGAGAGGTGATGTATGGAATGGATGGTGAAGAGGCTTGGTACGCAGACTTTAAGAACAAGAAAGGAGTCAAGGTTCTGCCCAGTTTTGGAGGTGCTGTGAGAGTCCCAGAAGGACTTTATGAAGAATCTGTGGCTAATCTACAGACCTGCAAAATGAACCTGAAACTTGCACGTGGAGCTTTCAAGGACCTCACACTGGAGCAGgATCCTCCTTCCAGTCTGATGATCTACACCAAAGAAGCCGTGGAGCTCCGAGAGAAGAACACCCTCATCTGTTATGTGACTGGTTTCTATCCTGCTCCTGTCATCTTCTCCTGGACAAAGAACGGAGAGAACGTCACCGAAGGAAGCAGCACCAACCTTCCCTACCCCAACAAAGACGTTTCCTTCAATCAGTTCTCCAGACTGGACTTCATCCCACAGCTGGATGACATCTACAGCTGTACAGTCAACCATCTGGCCCTGGACCAGCCACTGACCAGGATCTGGGaTATGGAGAAGACTCATCCCGGTGTtggacctacaattttctgtgGACTgggtctgactgtctgtctgcttggTGTGGCTGCTGGAATCTTCTTCCTCATCAAAGGAAATGAGTGCAGCTGATTGGTTGGGGATGATGATGTCAATAGTGTAAAGAGTAGATACGGTACAGATGTGAGGAGCTGCTGCT

Function

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641717.1 lncRNA upstream 17540 38400341 ~ 38407337 (+) True LOC120573411
XR_005641716.1 lncRNA upstream 19011 38400341 ~ 38405866 (+) False LOC120573411
XR_005641719.1 lncRNA upstream 19011 38400341 ~ 38405866 (+) False LOC120573411
XR_005641718.1 lncRNA upstream 19014 38400341 ~ 38405863 (+) False LOC120573411
TU202855 lncRNA upstream 40367 38384053 ~ 38384510 (+) True G149932
XR_005641715.1 lncRNA downstream 28583 38457241 ~ 38480387 (+) False LOC120573410
TU203030 lncRNA downstream 34484 38463142 ~ 38518330 (+) False G150060
TU203033 lncRNA downstream 45573 38474231 ~ 38476269 (+) True G150063
TU203034 lncRNA downstream 45573 38474231 ~ 38494700 (+) False G150063
TU203036 lncRNA downstream 49752 38478410 ~ 38482190 (+) True LOC120573410
XM_039823128.1 mRNA upstream 72039 38347656 ~ 38352838 (+) False LOC120573406
XM_039823127.1 mRNA upstream 72039 38347714 ~ 38352838 (+) False LOC120573406
XM_039823113.1 mRNA upstream 171989 38229862 ~ 38252888 (+) True LOC120573398
XM_039823114.1 mRNA upstream 171989 38229862 ~ 38252888 (+) False LOC120573398
XM_039823099.1 mRNA upstream 318682 38064701 ~ 38106195 (+) True LOC120573389
XM_039823122.1 mRNA downstream 23345 38452003 ~ 38456179 (+) True LOC120573403
XM_039823102.1 mRNA downstream 114460 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA downstream 114473 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA downstream 114473 38543131 ~ 38561745 (+) False LOC120573390
XM_039823100.1 mRNA downstream 114474 38543132 ~ 38561744 (+) True LOC120573390
TU202802 other upstream 66020 38352481 ~ 38358857 (+) False LOC120573406
TU202803 other upstream 66020 38352481 ~ 38358857 (+) False LOC120573406
TU202805 other upstream 66020 38352481 ~ 38358857 (+) True LOC120573406
TU202808 other upstream 73044 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other upstream 73044 38264437 ~ 38351833 (+) False LOC120573406
TU202761 other downstream 24767 38453425 ~ 38456157 (+) False G149880
TU202765 other downstream 24767 38453425 ~ 38457596 (+) False G149880
TU203025 other downstream 77805 38506463 ~ 38521503 (+) True G150060
TU203058 other downstream 253673 38682331 ~ 38728091 (+) True G150081
TU203168 other downstream 451913 38880571 ~ 38883270 (+) True G150139

Expression Profile