RNA id: XM_039823136.1


Basic Information

Item Value
RNA id XM_039823136.1
length 4331
RNA type mRNA
GC content 0.49
exon number 12
gene id stim2b
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17687074 ~ 17730399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAACTTGCATGCCCCGGTCCCCGGAGTGTGGAAGTGAAGAACAGTAAAGCGGGTATCATCCttacatactgtctatggtatcATCCATCCTCCGCGTCACCATGACAAGAAAAAAACCCGGAAAAAAACCCGCTATGTTTTTGAGTGAGGATTCCTATCCATTCTACGGAGGCGGTTCAAGACTTCCTCCTAGCTcggctaaaaacaccaaaatcacCCGGCGGCAGCCGTGAGTTGTGTCACCCATTACCACCACATGAAACCCTGGGTAGGAAGTGATGCTCCGCTGAAAAATGATCTGAAATCAAAAAGAAATCCCTCCGCTTTTATGTCTTTCTCGCGGCAGTAGTCGTGGCCAAATTAAAAGccatctctccccccccccctccctccctttcctgATGCCAACGCATTTTACATACCGACTTCCGCCCCGCTCGGCTTTCCCTCCCCAGTCTGCATCGGTCGGCGAGCAGCTGATATGACAGGAGGATACAGTATCACACACGAGCCGTGAAAAGCTGACTTAAAAACTTCATTTAGAAAGTAGGCGGATGTCGTGTGCGGTTGATATAGGTCGGGAAAGGATTAGGGGAAACGGAGGAAGAAGAAGCCGATGTATTTTTTGATGAGATGGGATTTGCTACTTTCGTGTGAAGAGGCGGACCTATGAGACGCTGCGAGTTCAATATGCTGAAGCTGTACCCGGTGTTTGTATACTGTACGTGGAAGTACAGAGACTATTTTCTTCCAAGTCACAGGCCTACGTAAGGATTTAATACAGCACTTGATATTCGTTCTGGCTCACAGATATCCACGGTAGAAAAACTACTACCAtttggtttttttgttttggataAGGGAATTCCTTAAGATAGTCTGCATGTGTTTTGCTCCTTTGGTGTCTATTCACTACAAGGTCTTTTTTgttagatattatatatatttgaaatCGATATAAATAAGATATGGGGGACTGGCTTGTCGTAGCTCGCAACAGTCACCCCTCTGAAACAGACAGTAAACCCATTAGAGGCTAGTCCTTTTGTAAGGGGGTCTTATTTCGAAGTTGTCTTTGACCCACGATGAACTATTATTTTGTAGGtctttttggggggttttctgACCGCATTGACTGCTCCTGTTTTAGCTTTTAGCGGGTGGGTTTGCAAACTAATCTACTGCGGGGTTTTTCTTTAAGTTGGTGCATTTTTCCAGGTGTCTCTTTTTCTCGTGATACCTCATACTTGTACTGCTTAAAAGACAGCTTTTTTTTGACTGGCTATTGCAGTTTTTTCcagtctgacattttttttctggaTTGCCCCAGTCATCCCTAGTCCCACGGAAACGAATAACTCGCCTTTCACCTCATTTTCCCACCATGAGTTACATCCACAAGGTATTGAATGTTTTGCTACGTGGACTCGTCATCTATGCGGTACTGGGCTTGGAGTGCACTTACTCGAATGATCTTCCCAGCCACTCGTCTGATGCTGCAAATGTAGCCATCACAGACCCCTGTGTCATAGTGATGCCGCCATGCATGGGCGAGGACGACCGCTTCAGTCTGGAGGCACTGCGGCACATCCACAAACAGCTGGACGACGACAATGACGGGGGAATAGAGGTCAACGAGAGTGTGGAGTTTATAATAGAAGACATGAAGCAGCAGCAAACCAACAAACACAGCAACCTGCACCGTGAAGACCAGCACATCACTGTGGAGGAGCTGTGGAAGGGCTGGAAGACCTCTGAAGTCCACAACTGGACCGTGGATCACACAGTGCAGTGGCTGAAGGAGTCGGTGGAGCTGCCGCAGTATGAAAAGCACTTCCGGGACTTCCGGGTCACGGGGAACACTTTACCTCGAATAGCGGCAAATGAACCGTCGTTTATGTCGATGCAGCTGAAGATATTAGACCAGCGGCATAAACAAAAACTAAACCTAAAGGCACTAGATGCAGTGCTTTTTGGCCCTCCTCTCCGTCCACAGCATAACTTGATGAAAGACTTTGTCCTGATGGTCTCCATAGTGATTGGTGTCGGGGGCTGCTGGTTTGCCTATGTGCAGAACAAGTGCAGCAAGGTACACATTTCTCAGATGATGAAGGATCTGGAGAGCCTGCAAAATGCTGAGCAAAGCCTGTTAGACCTACAGAGCCGGCTGGAAAAGGCTCAGGAGGAGAACCGGACGGTGGCCGTAGAGAAGCAGAACCTCGAGCAGAAGATGAGGGATGAGATCAATGGGGCCAAAACGGAGGCTCACAGGCTTCGAGAGCTGCGAGAGGGCGCTGAATGTGAACTCAGCCGGCTCAAATATGCTGAGGAAGAGCTAGTACAGGTGCGAAAGGCCCTAAAGCGAGCAGAGAAGGAGATGCATTCGGAGCGCTCGGTGCCTGAAGCTCTCCAGAAGTGGCTCCAGCTCACACATGAGGTGGAGGTCCAATACTACAACATCAAGAAACAGAATGCTGAGTTTCAGCTGTGCATCGCCAAAGACGAGgcagagaaaataaagaagaaaagaggttcTGTGTTCGGAACCCTTCATGTAGCTCACAGCTCATCACTGGATGAGGTGGACCACAAGATACTAGAAGCAAagaaagcCTTGTCAGAGGTAACAGCGTGCCTGAGGGAGCGGCTGCACCGCTGGCAGCAGATTGAGAAGCTTTGCAACTTCCCTGTGGTCAATAACTCGGGGCTGCCGAGCCTGACGGCCAGCCTCTACTCAGACCACAGCTGGGTGGTCATGCCGCGAGTCTCGGTGCCTCCCTACCCCATCGCAGGAGGAGTGGATGATCTGGACGAGGACACGCCTCCCATCATTCCACAGTTTACATCGGCCACAATGATCCGGCCCTCGCTGAACCGCAGCAGCAGCCTGTGTCGTTCCCGCCGGAGCCTGCTGAGCTCTCCGCAGTCCTCAATGATGTCCCCAGACCCCGACCTGCTGTCCATGGCCAGCTCGTCCCTCTCCTATCGCCACGAGGCAGACGACGAACACATCCTGTTCAGCTCGGATAGGAGGGGGGAATCGGCTCAGGAGGGCAGCTCCGACACAGACTCTCTCAACTCCTCCATGGGCCGAAAGCAGCTGCACAACCCCTGCACACCGGGCTCGGACACCCTGTACCGCAAGATCTCCCGCGAGGAGCTGCTGCTGTTCAGCCAGAGTTCGGAGCTTTCTGCGTCAAACCCCGCCACGTCCCacactagcagcagcagcagcagcagcagtctcaGGGACTCCacgcctcctcctcccactcCAGCCCCCACCCCCTCTGGCCCACCCTCCACCTCGCCTTCCCCGGCCTTGGAGCACCACCCGTTTGCACAAAGAGGCTCGCCCGACCTCACCCGCATTATACCCGAGTCCCAAAGTCTAACCTTCTCACAGGGGAGCGTCACCTCTCCCACGGGTAAGGGCATGTACAACGGCATCCTGGAGAAGTCCTACAGCTACGGCCAGCTGCCCGCGAGCATGCTGCCCAATGTGGGGCGTAACACGTCCCTTACCTCCTTGGACTCGGAGGGCCGGAGCGTGGGAAGGGAAACCAAGCTCCAGAGCACCTCCTCCCAGGACTCCAGCGACAATGGAGAGAAAATCAAGCGCTCCTCCTCTAAAATCAAAAGCTTATTTaagaagaaaaagtaaaacCTGCAGAGTGAGATAGTGTATGAGAGagaaaaattaaatataaagaGTTGTTTTAGCCCTAATACTAAAAAATGGACATCACTGTAAGCTAAAACATTGAATTTTCTCtcatattttcttctttttgtcatCAAAGATGGAATGTAGCTCAGTCTGTGTGCCGTTAAACGCCTCAGACTGGTAGCCTTATTTTTCAATAATGCCTTTTTATTTAGTTCACTTGTAGCCTCACAGGGAAACCTGCATAGGTCAAtgaaaggtcaaaggtcatgaTAGTTGTCATCCGAACAGCCAAAACACATGACCTGTTCACTGTTTTCTATTCATTTTGGTTTGAACCAAAAAGTCACTGTGTGTAAGGGTCTAAAGGTGAAGGCCATAAATGTGTATTGTTTAGTACAGAATGATTTTTGCTGTTCCTACTGAAAGTATTTAAAACACACTTTCAGCAGTGACAGCATCACATGCATATCACCAAGAAAAACTGGTCATAAGAtttcttaaaaacacaatttcgaCAATTTCTTTCCAAAGTGTCCTAACTAATCCTCTCCGTTCAAATTATGGATTGCATCTTGCGAAGTGTTTAAGGTCCCTAACTCATGTACTTGATTAATTTcccttgaagaaaaaaaaaaaatctgctaaGTTTGTTGCACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641723.1 lncRNA downstream 2121 17682075 ~ 17684953 (-) False LOC120573415
XR_005641722.1 lncRNA downstream 2121 17682075 ~ 17684953 (-) False LOC120573415
XR_005641724.1 lncRNA downstream 2213 17682075 ~ 17684861 (-) True LOC120573415
TU194119 lncRNA downstream 439441 17247376 ~ 17247633 (-) True G143852
TU194099 lncRNA downstream 718904 16967952 ~ 16968170 (-) True G143837
TU194173 lncRNA upstream 31981 17762380 ~ 17763705 (-) True G143898
TU194197 lncRNA upstream 122000 17852399 ~ 17853814 (-) False smim20
TU194329 lncRNA upstream 156879 17887278 ~ 17889652 (-) True G144013
TU194348 lncRNA upstream 243500 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 261746 17992145 ~ 18002471 (-) True LOC120572704
XM_039821850.1 mRNA downstream 437442 17230599 ~ 17249632 (-) True LOC120572513
XM_039822851.1 mRNA downstream 461542 17121043 ~ 17225532 (-) False pcdh7b
XM_039822848.1 mRNA downstream 461543 17119707 ~ 17225531 (-) False pcdh7b
XM_039822850.1 mRNA downstream 461543 17121062 ~ 17225531 (-) False pcdh7b
XM_039822849.1 mRNA downstream 461543 17121062 ~ 17225531 (-) False pcdh7b
XM_039821851.1 mRNA upstream 3933 17734332 ~ 17753015 (-) True tbc1d19
XM_039822623.1 mRNA upstream 33787 17764186 ~ 17821078 (-) False rbpjb
XM_039822625.1 mRNA upstream 33787 17764186 ~ 17790092 (-) False rbpjb
XM_039822626.1 mRNA upstream 33787 17764186 ~ 17778733 (-) True rbpjb
XM_039822624.1 mRNA upstream 35891 17766290 ~ 17790356 (-) False rbpjb
TU194121 other downstream 437520 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 437520 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1643755 16019657 ~ 16043319 (-) True acap1
unassigned_transcript_699 other downstream 2332739 15354247 ~ 15354335 (-) True trnar-ucu_16
XR_005641487.1 other downstream 2565125 15097528 ~ 15121949 (-) False LOC120572742
TU194183 other upstream 14555 17744954 ~ 17752989 (-) False tbc1d19
XR_005641649.1 other upstream 36101 17766500 ~ 17821077 (-) False rbpjb
TU194343 other upstream 329793 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 383453 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 864703 18595102 ~ 18597231 (-) True G144258

Expression Profile