RNA id: TCONS_00006834


Basic Information

Item Value
RNA id TCONS_00006834
length 2240
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_003484
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25681335 ~ 25689873 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATCGCATTGTGGTTTGTTGATGTTTGTGTCAAACTCTCGGTCGTTCGTTGTTACTAAAGAAAAACCTCGAAACCGGAGGAATAAAGTCGAACTGTGGTGATTGTAGCAGTTCACTGACACCTCGTATTATGCAACTATACATGCGGCGAACAAACTGTTCATAAAAAATCAAAACGGCCGTTTATTCTATTGCGAACTCGCAACAACACAAATCACCGCAAGCTGGCCAGCGATGACAATCCTCCCGAAGAAGAAACCGGTGTCCGCAGGCGGTGGCGGTGATCACACGGACGAACCGGACAGAAGAGGTGGCTCTGAGACGCACCCTCACCCCCTCGCGGGACGACCGGGGTCCCGATCAAGGGCCTCTCCGCCGCCGTGGACATACCAGGCCACACCGCACACTTCCAGAGAGGAGCGGCGGATCGAAGCAAGCGCTCGCCCGCAGGCGGCCTCCCCGCAACCTGGTATCGCTGGAGCTCCGCTCGTGCAGTGTGAAGGAAGCGCGAACTCGGGAACTCGGGTCGAGTTACCGTGCGGAGCAGGCGGTGTCGGAAGCTGCTGCTCGGGACCCGGACTCAGCAAGCGCAGACGGCAAGCGGTCTGCTCCAGCGGTTTGACAGGTGGAGGAGGGAGAGTGGGcggcggaggaggaggaggcgggAGTCCAGCGTCCGAACCCGAGGAAGGAGCTGGAGGAAACAACAGTGAGGATGAGTATGAGAATGCGGCCAGACTTCAGCTTGTGGACCCCGCCACAGCCGAGCAGCAAGAAGAATGGTTTGAGAAAGCATTGAGGGAAAAGAAaggctttgaaataaaaaaaatgaaggaagatgGAGCGTGTCTTTTCAGAGCAGTTGctgATCAAATATACGGGGACCAAGATATGCACGATGTGATACGGAAGCAATGTATGGATTATTTGACAAAAAATGCAGATTACTTCTCCAGTTACGTCACCGAGGACTTCACCACATACATTAACAGGAAGAGGAAGAACAACTGCCATGGAAACCACATTGAGATGCAGGCCATGGCAGAAATGTTCAACCGACCGGTGGAGGTTTACCAGTATGGCATAGAGCCAATTAATATTTTCCATGGCATCCAAGAGAACAATGATGATCCAATACGTGTCAGTTACCACAAAAACATCCATTATAACTCTGTGGTGAATCCATACAAGGCCAGTGTCGGGGTCGGGCTGGGCCTGCCCTCCTTCAAACCAGGGTTTGCTGACCAGTGTCTCATGAAAAATGCTATAAAGACATCTGAAGAGTCTTGGATTGAGCAGCAGATGCTGGAGGATAAGAAGAGAGCAACAGATTGGGAGGCCACCAATGAGGCCATCGAGGAGCAAGTGGCTCGTGAGTCCTATCTGCAGTGGCTTCAGGACCAGGAGAAGCAAGCAAGACagCCTCGTAAAGCTAGTGCAACCTGCAGCTCTGCCACTGCCGCCACATCCAGTGGTTTGGAGGACTGGGGTTGTCGGTCCCCTCGTCAGCGTAGCTCTGCACCCTCTCCAGAACATCCAGGCCCGGCTCATGCTGAACCTTCTGTCAAACCCCCGTCCCCTGCTGGAGCTTCGCTGGTGCTTCCCAAACCCCCTTCACCATGTGCCCCGGGTCCAAGTCATCAGTCTTCAGCCAACTCTTCTCTGGTGTCTCTCTACCCAACCCTGGGCTACAGGACTCTTATGCAGGACATGTCACCTACTGCCTTTGGTTTAACAGATTGGGAAGACGACGACGTGCTGGCCTCAGTTTTGGCTGCTTCACAACAAGAATACCTCGATAGCTTGAAAAATGCAATGCACAGAGAATCTTCTCCAGACTGCAATTGATACATTGGACAGCACAAACCACAGCTGCGTTTCTCTGTTTTAACATCATGCAATGTTTCTTCCTTTCCTCTGTTTCAATACCACTCTATTCTGATCTTTCTCCATCGTTTTTTGCTAACCTACTTTCCTTAATTTCATTAAACTTCATGGACCTAGTTAGGTGCATGTTTAAATCAACATTGTAaaattaatattgaaaatatCATCTCAGCTGTTTATTATAATAATCGGGTGTTTTCATTATTTGAGAAGAATAAATTATGCTAATTAGTACAACTATGTGTTTTCTCTCTGATTTTTCTTCATTGACCGGTAGGGTTGCACTATTTAATGGTAATATGGTAGTATcacgatactatggctccaaaatactggagGTGCCgatgtagtt

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0005575 cellular_component cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-50 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5).

Ensembl:

ensembl_id ENSDART00000121478

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006823 lncRNA upstream 132789 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006816 lncRNA upstream 199098 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA upstream 199098 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00008402 lncRNA upstream 422338 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008616 lncRNA downstream 139497 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 498644 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008618 lncRNA downstream 536209 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006845 lncRNA downstream 706040 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00006846 lncRNA downstream 706766 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006832 mRNA upstream 1614 25638172 ~ 25679721 (+) False XLOC_003483
TCONS_00006831 mRNA upstream 2202 25634041 ~ 25679133 (+) False XLOC_003483
TCONS_00006833 mRNA upstream 5645 25638228 ~ 25675690 (+) True XLOC_003483
TCONS_00006830 mRNA upstream 49893 25619932 ~ 25631442 (+) True XLOC_003482
TCONS_00006829 mRNA upstream 56363 25619892 ~ 25624972 (+) False XLOC_003482
TCONS_00006836 mRNA downstream 3522 25693395 ~ 25709311 (+) True XLOC_003485
TCONS_00006837 mRNA downstream 45605 25735478 ~ 25750060 (+) True XLOC_003486
TCONS_00006839 mRNA downstream 673562 26363435 ~ 26369549 (+) True XLOC_003491
TCONS_00006840 mRNA downstream 686106 26375979 ~ 26401674 (+) False XLOC_003492
TCONS_00006841 mRNA downstream 686127 26376000 ~ 26380159 (+) False XLOC_003492
TCONS_00006817 other upstream 198365 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 202917 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 378778 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 553473 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 640698 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006838 other downstream 388074 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 914738 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 1830583 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 3662228 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 3876874 29566747 ~ 29571528 (+) True XLOC_003523

Expression Profile

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