RNA id: XM_039823143.1


Basic Information

Item Value
RNA id XM_039823143.1
length 2846
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120573420
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8005773 ~ 8009869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacgcaacagacagaagaagaaaaggcaGGCAAAAAGCAAACGGAAGTCGGCATCCGCCATTCGGCTAAAGAACAGCTCTCGAGAAGGATTTGAATTCTTTGTAGGGGCCGCACGGTAAAACCAAAAAAGATCTTTAACAATGGTGAAGATTTTTGTGGGAAATCTGCCCCGAGAAGCAGACCAGGAGGAAATCAAGGCACTCTTCACGGAGTACGGCACTGTCACAGAATGTGCCATCATCAAGAACTACGCCTTTGTCCACATGGATGACCGCAAGGACGCCACCAAAGCCATTAAGAACCTGCACCTCTACAAGCTTCACGGCACACCGATCAACGTGGAGGCCAGCCACGGGAAGAACCAGGGCGCAGTCAAACTGCATGTAGCTAATGTAGAAAAGGGAGCTGATGACGAGCTCCGTGCTCTTTTTGAAGAGTACGGCTCAGTCACAGAGTGTGCGGTTGTCAAGAATTTTGCTTTTGTACACATGTCTAACTCTGAAGAGGCCATGGATGCCATCAAGGGACTGGACAATTCTGAATTTCAAGgCAAACGCATCCATGTTCAGATTTCTAAGAGCCGTCCCAGACATGACGAACGGGATGActacccccctcctccagacagGGGTGGCTATTGGCCTCGTTACCCGGGAGAGAGGCACGACCTTCCCCCCCCACCCAGCTACATGAGAGGCCGCCTCGGCCATTTACCCCCAGGTTACCCTGCTCCTCCGCtgccaccccctccccccagaCGATCCGTTTATCCTGAACGACCCTATGAGGGTGAAAGGGAGAGATACGGCGTGGTAGATTACTATGAGAAGTACAGAGCCCGTCCGTATGGCATGGCCTATGAGGACCAACGTGCTGgcgcccctcctcctccccctcccccctcagcCGTCGTCCGAGACCGCCTTATGACCTCGTCGCTTGACCCCTATGAGCGTCGTCCCCTCCCACCTCCTCCGTCCTCGTACTATGCCCGAGATCGCAGTCCCCTCCGGAGAGCGCCTAGCGCGCCTATGCCCCCTGCCAGTAATGGCTACTCCTACGAGCGCTCTCGACTCTCCCCGGTTTCCCGGGTCCCGGCATACGGAGTTCCACGCGCCAGGGACCCCTACGCAGAACGGCTGCCTCCGCCACCGCCTGCACGCTACGCTTATTAAGCAAGGCCCTGGCATGTGAAGGATCGTCGTCCGACTGCGTCGCCGCTCGCCGCCTCCTGATGCACGTGACACTATCCTCTTCCTGTCTGTGGCTGAGCGCGTTACGTTCACCTGCGACGCTCACAGGAGGAACTGAATTGCCGACGTCCtcgtctgtttttgtttttattttgggaaAGCTTTTActcgttttttttccccccctgaTTGTTTTAGTTTGTCATTGTGCTGTAgtgtatatatactttttttttttttttatggtggaCGTCTGAATTaggcgtttttcttttttatttgtacttttacgtTGAACAAAATTAGTATTCTGATGTTGTGTGTGACCTTAGAAAGCTGAATAATTTCAGTAGTCTCTAGGCGATACTTGTGACTGTAGATTTAACTGAACTGAATCATGTTTAGTATTAAATCTAATCTGCACGTTGGTTCCATCATGTTACGCATTCCCGTCGCAAACCAAACCTCAATGTGGCGGTGCTGTGAAAAGTTAAACTGCTAAGACGTAAGGGTTTAACAAATGTAGAAAGTAACTGTTAATGGGACAGTCACTGCAAAGCGTTCACATGTACCTGTCCATTGTCGAACTTGTTTTTAATAAACGGATTTGTGCAGTAATGTTGTTCCCATGTGCCCAAAGTCATGCTCCGCGCTAAAACACCATCTGTGTCACCACTTAGTTATTCGAAAACTCTGCTTAAATCTTCGGAAAAAAATAAGCATGTGCCATACTTAATGATTATCCGTTTTATTAATGATGAACTCACGTGTAACAAACTAGTTCAGATCGTCACGCTGATTTAAATATCTCTGGTCTCAATTCATTAGCGTACCTTTTTTAGCTTGTCCCCTTCAGTGCCAAAATTGggaacatgttcacatttgaGCACAAGTGAAGAAGGGTGTAACACACTCCAGCCATACTCCCACCAGCTGAGCTCATAGGTGAGACTAGTTTACCTTGAATCTGGGGGGAGATGACATCAAAGGCTGCTGGAGACCTTCAGAGTCAACAGGTAAGTCAAGGGCTTTAAGGACTACTGAAGTAGAAAGTACTGCAGACGTTGTCGCACATGCTCACATTGAACTTCTCTAGGTAAATGTTGCTAGTTTACGATTAACTACAGAGGTTTGTAGTAGCTCTGgagtgttagctagctaactgtatCACTGTATGTATCATAACTAATATCAATCATTGTACACAGAGCTATCCATTCAGCTGTAAATCTGCTCTTTGAATCGGTAAGTTTGCTGTGAAATAAGCAATGTATATAGTTGACAGGTTAGGCAATGCCAGCGACTTGAATTTGGACTAGGGTTATCCAGCAGGGTTTGATGACCGTAGTTGTCATCTGGGAAAGatgtttgttcttttttgtAATTGGAAATTAAGAGAAGCTTCCAGGATACCTCTTTGTTCAAACTGAAAGAGTTAAGAATTTGACTGAATGGACTAGTAAAATCTACACTAGGTCTTGTAGACATACCTTTTTTAGAACTCATATAACACATGAAGTCAATTAACCATACAATGAAATTAAAACCAACTTATTTTACACAATTTTGATGGACCTGAGACATTTACAGTACTTTGCATTGTATTGCTGTTTTGAAAGCTGACCTGCATGAATAAAATATTTCCAACTGTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191337 lncRNA upstream 68283 7840930 ~ 7937490 (+) True G141857
TU191356 lncRNA upstream 109560 7895851 ~ 7896213 (+) True G141871
TU191354 lncRNA upstream 120126 7884822 ~ 7885647 (+) True G141869
TU191350 lncRNA upstream 129833 7874406 ~ 7875940 (+) True G141866
TU191306 lncRNA upstream 222738 7750283 ~ 7783035 (+) True G141835
TU191464 lncRNA downstream 49337 8059206 ~ 8060478 (+) False LOC120572385
TU191466 lncRNA downstream 51190 8061059 ~ 8061293 (+) True G141942
TU191467 lncRNA downstream 51530 8061399 ~ 8061861 (+) True G141943
TU191472 lncRNA downstream 59917 8069786 ~ 8073974 (+) True LOC120572412
XR_005641445.1 lncRNA downstream 60313 8070182 ~ 8073990 (+) False LOC120572412
XM_039821603.1 mRNA upstream 10345 7990198 ~ 7995428 (+) False LOC120572330
XM_039821602.1 mRNA upstream 12346 7990198 ~ 7993427 (+) True LOC120572330
XM_039821600.1 mRNA upstream 20558 7970017 ~ 7985215 (+) True fxr2
XM_039821601.1 mRNA upstream 20558 7970017 ~ 7985215 (+) False fxr2
XM_039821551.1 mRNA upstream 281159 7722209 ~ 7724614 (+) True LOC120572296
XM_039821644.1 mRNA downstream 9367 8019236 ~ 8020881 (+) True LOC120572361
XM_039821683.1 mRNA downstream 47786 8057655 ~ 8060449 (+) True LOC120572385
XM_039823331.1 mRNA downstream 296116 8305985 ~ 8314768 (+) True LOC120573542
XM_039821685.1 mRNA downstream 313906 8323775 ~ 8325576 (+) True LOC120572387
XM_039823334.1 mRNA downstream 358271 8368140 ~ 8370820 (+) True LOC120573544
XR_005641421.1 other upstream 8065 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other upstream 8066 7990198 ~ 7997707 (+) False LOC120572330
TU191297 other upstream 284136 7718020 ~ 7721637 (+) False LOC120573538
TU191293 other upstream 288444 7716614 ~ 7717329 (+) False LOC120573538
XR_005641634.1 other upstream 1365528 6588951 ~ 6640245 (+) False LOC120573071
TU191556 other downstream 402810 8412679 ~ 8413237 (+) False LOC120573548
unassigned_transcript_686 other downstream 402812 8412681 ~ 8413334 (+) True LOC120573548
TU191535 other downstream 443071 8452940 ~ 8496546 (+) True LOC120572397
TU192067 other downstream 2508760 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2691316 10701185 ~ 10702028 (+) False LOC120573689

Expression Profile