RNA id: XM_039823153.1


Basic Information

Item Value
RNA id XM_039823153.1
length 2192
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120573428
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 15327456 ~ 15332663 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACACCCTGCCTACGATACAGTGTAGTACAGTGCAGTGCAGTGGACAAGAGGTGATAGAGAGACGATGGAGGTAGACGAGGTGGTGTGTTTGCCAAGGTTGCCCCGGGTCGCTGTGTGCGGTGGTACACATGGCAACGAGCTGTCTGGGGTGTACTTAGTGAGAGAGCTGCTGAAGGCAGAGAAGAAAGTGacggagaaggaggaggaagaaccCCCGTCAGTGCTGATGGTGCTGTCAAACCCGCGGGCCATGCAGCAGTGCCGCAGATACGTCGACACCGACCTCAACCGCTGCTTCACCCACGCCAAGCTCAATGGTCCCATACCAGACGATGCCCCCTACGAGATAATCAGATCCAGAGAACTGAACGCCACGCTGGGTCCAAAAGGAAATCCTGAGGCGGTGGATCTTGTTTGTGACCTCCACAACACCACTGCCAACATGGGCCTGTGCTTCATCGCGTACTCTGACTGTGACTGGATCTGCCTGCACATATTTAGACATCTGCAGaggcagatGCCTGATGTACCAATGAGGTACATCCATTTTGACGTCTCCAATAAAGAATCATATTCCCTTGATTCAGTGGGAAAACATGGCTTTGCCATGGAGATCGGCCCACAGCCCCACGGTGTGGTGAGGTCAAACATCTATACGGCAATGAAAGTTGGTGTGCAGCACATGCTCGATTGGGTCCGTATCTTCAACTCAGGTACTATTTTTGAAGGAGGATGTGTGGATGTGTTCACTATGATTAAACACATTGACTACCCAAGAGACAATGAGACTCGAAACATCACAGCAGCCATTCATCCTCAAGTCCAGGACCGAGACTTCTGCCTGCTCCACCCTGAAGACCCACTGTTCCAGACTTTCTCAGGCGAAACTCTGAGGTATAAAGGCAAAGAACCTCTTTATCCTTTCTTCATCAATGAATGTGCATATTACGAAAAGGGCATCGCTCTCTCCCTGGCAAGGAAAAGGCGTGTTACGATTCCTGCAATCCGGGTGCAGACAGAGCAGCAGCAACGAGCTAACGAACAGGAATTTGCATCAGAAGAAGAGGAGTGAGGAAGGacttaacacacacaacatgatgAGAATGATGTGACTCTGAAATAAATTTTACAAAAAGCTTTTATTGAAACAACAGCAGTTGCTTGGAACACGCACGTGTACGCTCGCTTAAACTCACACACGATATTTAGGTGCACATTTATCAACTGTTTCAGCTCATAACTGGAGAGTGAACATCACTGAAGATTCACAAAAGCAGTCATACATGGACATTTGCTGTTATATTTACGGTACAGTGGATTCTGGGATAGAACGATTTCTTGACTTAAAAGGCTTAATATGCAAAATACAATCTAATTTACCATAAGACCCATCAGACCACATACAGTGCATCATTTCACAGGCATTCTTTAGTTTTATTGAGACTGGTGGTAATTTATACATGTCTGCAAATATATAGCATAGTTTTTAGGGTACTATTCTTTTCTAAATTGATTTTGTTTTGGGACACATCTTcaaaaaatagaaatagaaattcACTATGGACCAATACAGCAATATTCAGGATATGTTCAAAATAATTTAAGTGCAAAGGAACACTGTAGATTAGCACAATATGGCCTTTAATTTACATTCAGAATGCCTAACAGGGAAACGCTGTTTCCATTCATTCCTGTTGAATTGAAATGGTTGTAACaagtgaataaaaaataaatgaacaaatatgaatcaaataaataacaaacacaactatattcacaaaataaaaccaatGTATATGAGCATGTAAGGGCAACTAAACTAAACAAGAAATGGTTAAAAACCACGACAATTTTTAAAGCATAACTTTTGATATTTTCTAcaaaagcctaaaaaaaaatctgtcaaaaCGATAGTAATGCttgaaaatagtaaataaaacaattaattgggtaaagaaatgtaaaacaaacacaatctGACCCTAATAATGgccatgaataaataaatgtcacttaagttaaaaaaaaggaatgtcAATCTTTTTTGCAAGAACAGAAACGTATATACATAATATTCACTGTCACTCTCAATCATTGATGGCCACTGTCCCAGTCTGTGTTTTGAAGCAGCTAAAGTAAAAGACTTATTGCACAACAGCAAACCTgtcaaaataaacatattatgaATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193445 lncRNA downstream 10669 15313965 ~ 15316787 (-) True G143344
TU193374 lncRNA downstream 41058 15276713 ~ 15286398 (-) True G143317
TU193307 lncRNA downstream 135295 15189996 ~ 15192161 (-) True G143292
TU193296 lncRNA downstream 245426 15079305 ~ 15082030 (-) True G143281
XR_005641731.1 lncRNA downstream 253264 15070511 ~ 15074192 (-) True LOC120573482
TU193453 lncRNA upstream 1232 15333883 ~ 15334788 (-) True G143348
TU193463 lncRNA upstream 30944 15363595 ~ 15365593 (-) True G143356
TU193464 lncRNA upstream 34131 15366782 ~ 15367391 (-) True G143357
TU193471 lncRNA upstream 58094 15390745 ~ 15391085 (-) True G143364
TU193472 lncRNA upstream 58584 15391235 ~ 15391491 (-) True G143365
XM_039822130.1 mRNA downstream 83508 15234234 ~ 15243948 (-) True LOC120572736
XM_039821840.1 mRNA downstream 100505 15216695 ~ 15226951 (-) True LOC120572502
XM_039822127.1 mRNA downstream 117689 15203797 ~ 15209767 (-) False mfsd8
XM_039822126.1 mRNA downstream 117689 15203797 ~ 15209767 (-) True mfsd8
XM_039822123.1 mRNA downstream 124355 15193388 ~ 15203101 (-) True LOC120572732
XM_039821843.1 mRNA upstream 2439 15335090 ~ 15338220 (-) True LOC120572506
XM_039823155.1 mRNA upstream 6218 15338869 ~ 15353637 (-) True LOC120573430
XM_039822053.1 mRNA upstream 279055 15611706 ~ 15620641 (-) False LOC120572694
XM_039822052.1 mRNA upstream 279055 15611706 ~ 15620639 (-) True LOC120572694
XM_039821373.1 mRNA upstream 290652 15623303 ~ 15628703 (-) True LOC120572190
XR_005641483.1 other downstream 205502 15089110 ~ 15121954 (-) False LOC120572742
XR_005641484.1 other downstream 205502 15089110 ~ 15121954 (-) False LOC120572742
XR_005641489.1 other downstream 205505 15088999 ~ 15121951 (-) False LOC120572742
XR_005641488.1 other downstream 205505 15088999 ~ 15121951 (-) False LOC120572742
XR_005641487.1 other downstream 205507 15097528 ~ 15121949 (-) False LOC120572742
unassigned_transcript_699 other upstream 21596 15354247 ~ 15354335 (-) True trnar-ucu_16
XR_005641408.1 other upstream 687006 16019657 ~ 16043319 (-) True acap1
TU194121 other upstream 1915300 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other upstream 1915437 17248088 ~ 17249554 (-) False LOC120572513
TU194183 other upstream 2412303 17744954 ~ 17752989 (-) False tbc1d19

Expression Profile