RNA id: XM_039823172.1


Basic Information

Item Value
RNA id XM_039823172.1
length 3075
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120573446
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38776453 ~ 38791913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtctctcagacTGTCTAAAGATGGGTGTTTGTGCAGAAGAGGAAAACAAGGACAGAGAGCCATCTTCAgggctcagctgtgtgtctttGAAGAGTGAGCAGTCCATGGGACACCCTGTGTGCTTCACTACTGAACCTGCGCCTCCTTCACACAAACAAGGTTACTGCAGAGCCTGGGTGGTGTTCAGAAGTCTGTCTGTGACGAGTGACTGCTGCTGCCATGATTCCCCTCCAGACTCAGAAAGGAAGAGTTGTGGtggtgaggaagaggaagagacacTGTCCGTCTGTGTCCAAAGTTTCATCCTTTCATACTGGGACCAGTGTGGTTCATCTGCTGGGCGGCAGACACCCAATCACAGCTGCACTGTAGGAAttttaTGGAAAGTTTCACTTGAAAGTAAGATCCGTCTGAAGAGGAAATGTGAACGTGTGGTTGAAGGAACTGatcaaacaggaagtggaaccATACTCAACAGGATCTACATTGAGctctacatctcagagggacaGAGCGAGGACGTTAATACCCAACATGAGGTGAGGCAGCTTGAGACAATGTCCAAGATGGAGGCTATCCATGACTCTAAAATCAAGTGCCGCGACATCTTTAAAGCCTTACCTGGACAACCGAAACACATCAGAGTCGTTCTGACGATTGGCGTCGCTGGCGTTGGAAAAACTTTCTCGGTGCAGAAGTTCTGTCTGGACTGGGCAGAGGGTTTGGAAAACCAAGATATCACGTTGGTGATACCGCTTTCGTTCAGGGAGCTGAACTTGATCAAAGATGTGCAGTACAGTCTTCTTGAGCTGCTTCATGTTTTCCATCCAACATTACAGAAGCTCACAGCAGAGCAGCTCGCTGGCTGTAAAGCTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGAATTTCCCTGGATTTCAACAACAACGAGCATGTGTCTGACATCACACAAAAGTCATCAATCAACGTGCTGTTGACCAACCTCATCGAGGGGAAGCTGCTTCCCTCTGCGCTCGTCTGGATAACTTCCCGACCTgcggcagccaatcagatccctgcTGCGTGTGTTGACAGGGTAACAGAAGTACGAGGCTTCGCTGATAcccagaaggaggagtactttaGAAAGAGAGTCCGTGATGAAGAGCTgtccagcagaatcatctcccacatcaagacatccaggagcctccacatcatgtgtcGGATCCCAGtgttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCAGataggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagcaCAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACAGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAACTGCAGAATGGAAACATCATGTTTTACCAAGAAGACATCGAGCACTGTGGTCTGGAGGTCACAGAGGCCTCTGTGTACTCAGGAGTTTGTACACAGATCTTTAAAAGAGAGACTGTGATCTTCACGAAAACAGTCTACTGCTTCGTTCATCTGAGCATTCAGGAGTTTCTTGCTGCGGTCTACATTTTTCATTGTCACACAAACAGGGATTACGAGACACTGGAGTCATTTCTGGGGAAAGCATGGGGTAGGTATCGTAGCTGTGACCCATCTTTGGAAACGTTCCTGAGGAAAGCCATGGATGAATCCCTGAAGAGCAAAAATGGCCATCTGGACCTGTTTGTCCGCTTCCTGCATGGCCTTTCACTTGAGTTGAATCAGAGACTCTTAGGAGGACTTTTAGGTCAGACAGAGAACAGTCCAGAAAGCATCCAGAGAGTAATCCACAATCTAAAGGAGATGAGCACCTACGACATCTCTCCCGACATAAGCATCAACGTCTTCCACTGTGTGATGGAGATGAATGACAGCTCAGTACATCAGGAGATCCAAAAGTACCTGAAGTCAGAGAATAAGTCAGAGACACAACTCACGGAGATCCATTGCTCAGCTCTGGCTTTCATGCTGCAGATGTCAGACGAAGTTCTTGATGTACTAGACATGAAGGCATACAGGACGTCAGAGGAGGGGCGACTTAGACTACTCCCAGCTGTCAGAAATTGCAGAATGGCTCGACTTTCCTGTGGGCGACTTTTTGATACTCACTGTGAAGTTTTGGCCTCGGCTCTTAAGTCCAATCCCTCCCATTTGAGAGAGTTGGACCTGAGTGACAACAAGCTGCAGGATTCAGGGGTGAAGCTGCTGTCTGCTGGACTGGAGAGTCCACACTGTAGACTGAAGAGTCTCAGaTTAAGTGACTGCTGGCTGTCAGAGAGCTGCTGTTCTTCTCTGGCCTCAGCGCTGAAATGCAACCACTCCcctctgagagagctggacctgagtaacaacaaacTGCAGGATacaggagtgaagctgctgtcTGCTGGACTGGAAAGTCCACTTTGTAggctggagactctcagtttgaAGCACTGCAGTTTGACAGAGAGCAGCTGTTCTTCTCTGGCTTCGGTTCTCAAGTCCAACACCTCCCacctgagagagctggacctgagttaCAACAAGCtacaggattcaggagtgaagctgctctctgctggacTGGAGAGTCAATACTGTAGCTTGGAGACTCTACGACTAAGTTTCTGCAGTTTGTTAAAGAGCAGCTGTAGTTTCTTAAACTCAGCGCTGCAGTcaaacccctcccatctgagggAGCTGGACCTGAGTGACAATaagctgcaggattcaggagtaaAGCTGCTTTCTGCTGGACTGGAGAGTCCACACTGGAGATTGGAGACTCTCAGGGTGACTTAAACCTTGACTGCAGCGGAGAGCTTTGAAAGATGTCGGATTGCATTCTCACCtcaaggcgctgacacaccaacccgatgatcggccgtcggacagtctgacgaggtcggtgactcgagtctgttcggtgtgttccgtttcgtcgtcagtcggaggagccatcggccttcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203098 lncRNA upstream 10602 38765139 ~ 38765851 (+) True G150105
TU203107 lncRNA upstream 13173 38762615 ~ 38763280 (+) True G150114
TU203063 lncRNA upstream 53812 38688057 ~ 38722641 (+) False G150081
TU203118 lncRNA downstream 10596 38799117 ~ 38836167 (+) True G150123
TU203125 lncRNA downstream 12140 38800661 ~ 38807057 (+) True G150124
TU203152 lncRNA downstream 34091 38822612 ~ 38826628 (+) True G150132
TU203144 lncRNA downstream 70072 38858593 ~ 38907293 (+) False G150131
TU203148 lncRNA downstream 70072 38858593 ~ 38907068 (+) False G150131
XM_039823106.1 mRNA upstream 186954 38586072 ~ 38589499 (+) True LOC120573393
XM_039823102.1 mRNA upstream 214708 38543118 ~ 38561745 (+) False LOC120573390
XM_039821976.1 mRNA downstream 126898 38915419 ~ 38930312 (+) True LOC120572657
XM_039823622.1 mRNA downstream 163521 38952042 ~ 38955968 (+) True LOC120573707
XM_039821977.1 mRNA downstream 284837 39073358 ~ 39090901 (+) True LOC120572658
TU203058 other upstream 48362 38682331 ~ 38728091 (+) True G150081
TU203025 other upstream 254950 38506463 ~ 38521503 (+) True G150060
TU202765 other upstream 318857 38453425 ~ 38457596 (+) False G149880
TU202761 other upstream 320296 38453425 ~ 38456157 (+) False G149880
TU202805 other upstream 417596 38352481 ~ 38358857 (+) True LOC120573406
TU203168 other downstream 92050 38880571 ~ 38883270 (+) True G150139
TU203179 other downstream 128816 38917337 ~ 38924025 (+) False LOC120572657
TU203181 other downstream 146887 38935408 ~ 38936600 (+) True G150148
TU203192 other downstream 295401 39083922 ~ 39090869 (+) False LOC120572658

Expression Profile