RNA id: XM_039823199.1


Basic Information

Item Value
RNA id XM_039823199.1
length 2886
RNA type mRNA
GC content 0.55
exon number 12
gene id taf6l
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4650888 ~ 4663367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttctcttttttacCAACTTGACACTTAAATGGGTGCCTAGCTATGGTGCCTAGTGTTTAGAGAGCAACGTTAGCTACGCTATGTAAACTTCCACTCCGGCTCTGATGATACACAGCCTTCATTCAAGCTAAGAAGTTTCTGAGTGGTCATCGTGATCATGGCGGACCGGGAGGAGCGCCGCTTCGCCGAGGTTTCCCGGGAGTCTGTCAAACTCATGGCCGAGAGTGCAGGCGTGGAGCTCGCCGACGATGTGGCTGCTCTGCTGGCTGAGGACGTGTGTTACCGGCTCAGGGAGGCAACGCAGAGCAGCTCTCAGTTCATGAGACATGCCAAGAGGAGGAAGCTGACAGTGGAGGACTTTAACAGAGCTCTGCGCTGGAGCAAGGTGGAGGCCATATGTGGCTACGGGGCCCAGGATGCTCTTCCTTTCCGCTCAGCGAAAGAAGGAGAGCTTTTCTTCATTGAGGATCGGGACATCAACCTGGTCGAGTTGGCTCTGGCCACCAACATTCCCAAGGGCTGTGCTGAGACCATGGTGCGAGTAAACGTGTCTTACCTGGATGGGAAGGGCAACCTGGAGCCTCAGGGGACAGTTCCCACAGCGGTGCAGTCTCTGTCAGATGACCTGTTGAAGTACTACCAGCAGATCACACGGGCCATCCTGGGAGAGGACCCCCACCTCATGAAGgtggCTCTGCTGGACCTCCAGTCCAACTCCAAGATTGCTGCCCTCCTGCCATACTTTGTTTATGTCATCAGTGGGGTGAAGTCAGTAAGCCATGACCTGGAGCAACTCAACAGGCTCCTCCACATGGTGAAGAGCCTGGTTCAGAACCCGTACCTGTACCTGGGCTCGTACGTGCGTAGCCTGGTCTCCAGCGTCATGTACTGCATCCTGGAGCCGCTGGCCGCCTCCATCAACCCGCTCAACGACCACTGGACCCTCAGGGACTACGCAGCCCTGCTCCTCAGCCACATCTTCTGGACTCATGGCGATCTGGTGAGTGGTCTGTACCATCAGATCTTGCTGTCGCTCCAGAAGGTTCTGTCTGACCCGGTGAGGCCGCTCTGCTCCCACTATGGAGCTGTGGTGGGGCTTCATGCTCTGGGATGGAAGgctgttGAGAGAGTGCTCTTCCCTCACCTCCCTGCGTACTGGGCCAACCTCCAGGCTGTGCTGGATGACTACTCCGTTTCCAACGCCCAGGTCAAAGCAGATGGACACAAGGTGTACGGAGCCATCCTGGTGGCAGTGGAGCGCCTGCTGAAGATGAaggctctgtctctgtctcagcCAGCGGAGGGGGGCTCCGGGGGTCAGCCGGGCTCTGTGGGGGGGGCTATGGGTTACAGGGTGAGCTCCCCTGGCCTCAGCCCCCCCCCTGAGCCTTTGTCGGAGGCCGCCCTGGGAATCGCCAGCCACCTTCAGGCGGGCGGGGCCGGCTGTCCCTGGGAGGAGTGGACCCCGGTCCCTCTGCCCGCCATGTACTGCGAGCTCTACTCCTTCTTCGGAGACAGCCTGGCGGTCCGGTTCAGTACCGGGCCCGGCTTCGGCAGCTTCCCTCCCTGCGCCCTGGCCCATTCCGATGGCGCCAGGAAGGAACCCCCCGGCCCTGCCTCCAACCCTGACACCACCCGAAAGATGCCTCAGCTGACTGCCAACCTCAACATCAGCCCCCGACAGGACGGGAGTCCACGCACCGATCCGCCCCCCCCCAGCCTGGCAGCTACCGGGTCAGGAAGGTCCCTGGCTCGCTCCTCCTCCGTGCAGCGCTCCAGATCTTCCTCGTCCCGTTCGGGCCAGCGTTCAGCCGGTCCGTCTCGGGACGTTTTCCCCAAAGCTCGCTTCACCTCTCCTCAGACGGGACTTCCCGTGTTCTCCTTCCTCATCGGCGGGCGGCAAATGGGTCGCCGTTGCCAAGGCCGCCGCCCCTTCCAGACCACTTTTGCCCCGACTCCACCCCTCTCTGCCGTCACACCGCGTGCCTACGCCCACAAACTGCCCGTCATCGGCAGGGTGGGAAAACCTGTGCGCCGCTGGGCGTGTTCCCATTACTCCCTTCACCTGCCTCTCTAGAGACTGCACTACTACACAGCAGGGTCCCACTGCTACAGACTCTACACACAGCAGTAAACACACAGTACACGCAGTTTGGACAcgcacaagcaaattaagacaaCGTTTCCCACTTTAACATCGCTTCATCGGGCAGCATTTTAGAAACAATTTCAGGAACTGCACtgcaaaagacagaaaatatgaAGCACTGcaagtagggctgggtgataatTCAATATGATAATTGATCGTCTTTCACTGGCATAATATCGTGATCAGGTCATAAATCGAGATCATGATATACAGTTGCGTAGTCTAAATTGATCATTTACAAGCACATAACTCAGTTTGACTCAGAAAGTCTGTTTGAAACATTTTGAGggaatatcatttgaagaattGCAGATCTGTTTTAACATCACACTATCTTTGTGCACGCATGTAAACACAGTTTAAAACAAACTATTTTTTCTCTATAATTTCTTATAGagatgatgattatttatctaaaattgtcagatttttctccatatcgcccagcccgaCCTGGAGGTCCCACGGACCAACAGAAGTTTCTGGGGGGAGACTGTTTACTTTGGTAAACTATGGTTTGTCAGCCGGTGTTGGCCAAATCCCCGACAATATTAGAGTAGTGCAATCAGAATGTGAGAATAAAACTTTATTAGGTCATTTTCCAACATCACTGACAAGTGGTCAGCAATAGTCAGTCGATAAGCCCACATGTCTAAGTtgcttgtgttttctgtatttatacactgtatttccccactggggatcaataaaggtgcatcttatcttatctta

Function

GO: NA

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190283 lncRNA upstream 157854 4492677 ~ 4493034 (+) True G141084
TU190280 lncRNA upstream 160287 4489993 ~ 4490601 (+) True G141082
TU190278 lncRNA upstream 162361 4488281 ~ 4488527 (+) True G141080
TU190277 lncRNA upstream 162894 4487740 ~ 4487994 (+) True G141079
TU190237 lncRNA upstream 282551 4366561 ~ 4368337 (+) True G141052
TU190410 lncRNA downstream 115374 4778741 ~ 4826417 (+) True G141169
TU190420 lncRNA downstream 176040 4839407 ~ 4839638 (+) True G141178
TU190407 lncRNA downstream 189105 4852472 ~ 4855735 (+) True G141166
TU190421 lncRNA downstream 192436 4855803 ~ 4857185 (+) True G141179
TU190462 lncRNA downstream 252132 4915499 ~ 4915910 (+) True G141211
XM_039823553.1 mRNA upstream 1699 4646523 ~ 4649189 (+) True cth1
XM_039823550.1 mRNA upstream 9236 4597032 ~ 4641652 (+) False mta2
XM_039823551.1 mRNA upstream 9236 4597033 ~ 4641652 (+) False mta2
XM_039823552.1 mRNA upstream 9261 4597032 ~ 4641627 (+) True mta2
XM_039823545.1 mRNA upstream 56468 4528698 ~ 4594420 (+) True eml3
XM_039823024.1 mRNA downstream 1745 4665112 ~ 4670916 (+) True kcnk7
XM_039821981.1 mRNA downstream 21383 4684750 ~ 4734922 (+) True ehbp1l1a
XM_039821982.1 mRNA downstream 21383 4684750 ~ 4734922 (+) False ehbp1l1a
XM_039821988.1 mRNA downstream 21383 4684750 ~ 4734922 (+) False ehbp1l1a
XM_039821994.1 mRNA downstream 21383 4684750 ~ 4734922 (+) False ehbp1l1a
TU190258 other upstream 163281 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 205941 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 335350 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 335350 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 1346257 3256551 ~ 3304631 (+) False mllt3
unassigned_transcript_682 other downstream 1365273 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1573636 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 1925584 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 3053247 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 3054653 7718020 ~ 7721637 (+) False LOC120573538

Expression Profile