RNA id: XM_039823201.1


Basic Information

Item Value
RNA id XM_039823201.1
length 2812
RNA type mRNA
GC content 0.45
exon number 3
gene id si:dkey-19b23.8
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17864831 ~ 17870686 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTCACTCAACTCATTGACGTCGAGCAGGGAGGGAACGGAGGGCATGATTCAGTGTGTACATGAACGCTCTCCGTCTGTATACGTCTCGTTTATTTGCGCACGAGGAACACTGAGCTTACGGAAAACCAGTTACCGGCAGTGCGCttaatcgattaattgtttATATATACCTTTTAATTGACAGTTAAACGGGTTTAGTGTGAACGTGCAGGACAGGAGACTTCCTCCTGCCCAGTGTatgtttaaacaaaaaatatcaCTGAACTCTGCGGTTCACCTGAGGCGCACGAGGACATCGTTTGCATGAAACTGTGGCCAGataAAAGCAGTGGATGCAACTGTGCTCCATTTATAGAAGAAAAGTGGAAGAGTGGGAGAGGCTCTGAAGAGGACCAGCTGACCACCGGCAGATACGCCTCAGCTAAAATTTCCTCCAAACCCAGCCTGAAACGTACCATGTCTCTCAGCACATTTCACCTCATGCAGACTCTTAAGAACTCTCCGGCTGCGCTACGTCGCCGCTTTCGCCGCGACCGCACAGAATCCTTATCCCACGGCGACCCTCTTTTTAAGGTCCACTACCTGGGCACAGAGAAAATCTTCTCCCTGGATCGAGAGCAGGCCCACGACGCTATTAGCCGCCTGCTGGAAGGTATCGCAAATGGGAAAAAGCTGAGCAAAGATCACGCCCTGGTGGTGCGCCCAAGGTACGTCGAGGTCAAGGAACTGAGTACAGGTCGGCAGCTAACTAAGACGTACCTGCAGGACATTGCGTACTGTGCCGCAGATGCCAACCGGCCCAATGTCTTTTTGTACATCTGCAAACATCAGGGGCAGCAGCTGCAGTGTCGAGTGTTCTGGTGCAGCCGTGCAGAGCGGGCACTAGACATGACGGCTTGTCTGGCACATTCTTTCCAGCGGGCACTGAGCGACTTGCAGGACGGCTCGGCCACGCTGCAGCCAGGAGAGGTGAAGGGGAAACGCGGAGAGGAGTCGCCCAAATCTGCCGCCATCTCAAAGAGCTCTACGCTGCCATCCAGTCTGGGAAAAGttcgCTGGAAGAAGAGGGGCTCTGTGTCCCACAGCCCTCTCCGAGCCATCACGAGACGAGGATCTGCCTCAGACAGCTGGAACTGAACTTTTGAATTTTACCCTTTTTTAAACATGGGACCGCATTAACCTGATGACGACCTCAAAGATGACAGCACTGATCGGAGGGAGGGAGTGATTACGAGACAGAAGGACAAAGGGGATGAAGTGGGGAAAGTCCATATTTGGATGTATGAGGACTTGTGAGATGATGTTGCCATAATCGGTGAGCGTTTTGACTTGAAGGTTTTTGACGCAGCAAAGTTGTCCGTTGACTTTTGCAATTGTGGCGTCTAATGTAGCACAAAATGCTGTTGACTGCTGTCTTTGTTCACCTGCCAACAACTATGGTAGGACTCGTGACTGGCTGCAAGCCATTTGTGGACCAGACTGGATCATTTccgtacttttttttttttgggttggcTTATTTGTTTCTAAGTAGTCTACTTGATACTTAAGCCACCGAAGAGTTTAGTCTGTTGGAATAGGACAATTAAACCAACCATGATAGCAGCTGTTGGCCAAATGATCAACAGATGAAAGTCAAAAACTGGAAAAAGAcaacaaggtttttttttgttttgtttttaaggctGACTTTTATTTAACTGGCATTTGTGACAGGTTGTGATtatcattttattgtttttaacccTGTGGCACTACTAGgtttctcttcctttttttaattttttttaatttctttttaaattgaatgGACAAAACCACCCTTTTAATCTATGTTAGAGTTTTGGCAAAGATTACACAGATGCCAagatagagagggggaaaaTGCAGGCGTGTCATACAAAGTAAAAATGATTAGTCTGTAATGAACATAAATGCAGTTAGTAATTTCTGAGCACTTTGTCAAATTTGACATCTGAACACATCAGTTTAATTCCAAATGTCTTACGTTTTTAAGAGGTCAGTAGCAGCAGCACCTGGATTGTAGATGGAAAAAATTGACCCTAGCAGAACGTGCAGAGTCGACAAAATCCTCCCCTCAtcctgcaaaaacaaaaaacagatccTATCTGTCCACTGCGATTCATTATTTGCATTTATGTGGGGTAAAGCACACTCTGCCATGACTTGCGTTTTGTTTGCGTCCGAACACTGGGAACGCTGTGTTCCCATGTGAAGCCTCTGTGTGGAATGCGCAGCCATGCACCTGCATTCCaataggaggaggaggaaggggggggggggttgtgaaAATGTCCAACCATGACTTTGCATATAGAGCAGCCTCTTCAGTAGATGCTACAGTGTGCTTCTTATGCTGAGCCCTCGACTTGTTCGCATTCCCAAAGCCATAAAAGGTGCCTCAACTACCTAAGTTAAAATGACGATTATAGGCATTGATACGTGCAGTATTGCATAACGTGCTCTCATGATGGTGATTTCTGTCTTATGGTTTACAAATGAGAGACTTGATGATTAGTGGTACACCCTGAGGCTACCattcattttgtgttttctgaccaaaaCTAAGCTAGAAATGttgcctattttatttttttaaccggAAAGACGTTTTTGACTGATGTGCCACAAGGTTTTTATCAgttaattttaacattttgtacTCGTGATGTGTTGTAATTACAAACGGCGCAGCCCCAATCTCAGAAAAGGGGTTCAAGTGCCTGCTCTATTTTATTGTACAtatttaattatgtattttatgAAATATTAAAACCTTTTATACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194197 lncRNA downstream 11017 17852399 ~ 17853814 (-) False smim20
TU194173 lncRNA downstream 101126 17762380 ~ 17763705 (-) True G143898
XR_005641723.1 lncRNA downstream 179878 17682075 ~ 17684953 (-) False LOC120573415
XR_005641722.1 lncRNA downstream 179878 17682075 ~ 17684953 (-) False LOC120573415
XR_005641724.1 lncRNA downstream 179970 17682075 ~ 17684861 (-) True LOC120573415
TU194329 lncRNA upstream 16592 17887278 ~ 17889652 (-) True G144013
TU194348 lncRNA upstream 103213 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 121459 17992145 ~ 18002471 (-) True LOC120572704
TU194367 lncRNA upstream 145563 18016249 ~ 18019306 (-) True G144037
TU194570 lncRNA upstream 298607 18169293 ~ 18173021 (-) False mrpl52
XM_039823395.1 mRNA downstream 10994 17852371 ~ 17853837 (-) True smim20
XM_039822623.1 mRNA downstream 43753 17764186 ~ 17821078 (-) False rbpjb
XM_039822624.1 mRNA downstream 74475 17766290 ~ 17790356 (-) False rbpjb
XM_039822625.1 mRNA downstream 74739 17764186 ~ 17790092 (-) False rbpjb
XM_039822626.1 mRNA downstream 86098 17764186 ~ 17778733 (-) True rbpjb
XM_039823435.1 mRNA upstream 35414 17906100 ~ 17949655 (-) False chd3
XM_039823436.1 mRNA upstream 41302 17911988 ~ 17949657 (-) False chd3
XM_039823434.1 mRNA upstream 41302 17911988 ~ 17949657 (-) False chd3
XM_039823431.1 mRNA upstream 41302 17911988 ~ 17949657 (-) True chd3
XM_039823432.1 mRNA upstream 41302 17911988 ~ 17949656 (-) False chd3
XR_005641649.1 other downstream 43754 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 111842 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 615277 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 615277 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1821512 16019657 ~ 16043319 (-) True acap1
TU194343 other upstream 189506 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 243166 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 724416 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 824013 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 825410 18696096 ~ 18696169 (-) True trnan-guu_12

Expression Profile