RNA id: XM_039823242.1


Basic Information

Item Value
RNA id XM_039823242.1
length 2358
RNA type mRNA
GC content 0.48
exon number 12
gene id slc1a1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1550528 ~ 1574124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacactcgctcgcTGCCTCACACCATCGCTGGCTGGCCAGAAGCAGCGTCTGACGGCTGCATCCTTTGCTGTAGCAACACGGCTTCTCCATCCTCGTCTCTGCGTCGTCTGCACCTGACATCCTGACCGAGCGTCTGTTGTGTCTCCACAGGGGGCCATTGTGATTTCTCCTTTTTTTGGGGGttggaaaaaaatcaacaacaccACGGACATGATGGGTAACAAAGAACGACGAGGCGTGAATTTGAAAGGCTTGCTGAAGAGGAACTGGCTTCTGATTGCCACGGTTATATCAGTGCTGCTCGGGATCAGTTTGGGCGTCGTGGTCAGAGAGTATGCCTCCCTCTCCCATCTGGACAAGCAGTATTTTGGCTTCCCGGGAGAGATCCTCATGCGGATGCTGAAGCTTGTCATTCTCCCGCTCATCATCTCAAGCATGATAACAGGTGTTGCAGCCCTGGACTCCGAGGTTTCGGGAAAGATAGGCCTGCGAgctgttatttattatttctcaaCAACCATCATTGCGGTTATTCTTGGGATTATTTTGGTGATGACTATCAAACCGGGCGTCTCTCAGACAGCTGACCACATTGACAGAGCAGGGACCACGCCCAACGTCACAACAGTTGACACACTCTTGGACCTCGTCAGAAACATGTTCCCCGAAAATCTGGTGCAGGCTTGTTTTCAGCAATACAAGACCAAGCGCAAAGAGCTGGAGCCTCCGAAAGTTTCAGTCAACACCACCACAATTCCACCTCTCACAACTACTATCATGTCGGTGGTAGAGAACATAACAAAGGACTATCAAATCGTTGGGACATATTCTGATGGAATCAACGTATTGGGGCTCATTGTGTTCTGCGTTGCTTTTGGCCTCGTCATTGGGAAAATGGGCGAAAAGGGCCGTATCCTCCTGGAATTTTTTGATGCCCTGAATGAAGCGACCATGAAACTGGTCCAGATCATTATGTGctaCATGCCAGTAGGGATCCTGTTCCTAATTGCTGCTAAGATCATCGAGGTGGAAGACTGGGAGATCTTCAAGAAGATGGGTCTTTATATGGTGACGGTGCTGAGTGGTCTAGCTATCCACGCCACCATCTGTCTGCCACTGATCTTCTTTGTCATTGTGAGGAAGAACCCGTATACGTTTGCGTTGGGAATGGCTCAGGCCCTGGTGACAGCACTCATGATCTCATCCAGCTCGGCCACCCTGCCCATCACCTTCCGATGTGCGGAGGAGAACAATCGCATCGACAAGCGCATCACCCGTTTCGTCCTCCCAGTGGGCGCCACCATTAACATGGACGGGACGGCGCTCTATGAGGCGGTGGCTGCCATCTTCATCGCGCAGCTCAACGACTTCACTCTGGATGTGGGCCAAATTGTTACTATCAGTATAACAGCAACAGTTGCCAGTATTGGAGCTGCAGGAGTCCCTAATGCTGGCCTTGTCACCATGGTCATAGTCTTAACAGCTGTTGGATTACCTGCAAGTGATGTCACTCTGATAGTCGCTGTGGATTGGCTGCTGGACCGGTTCCGTACTATGATCAACGTCCTTGGCGATGCTTACGGAGCCGGTATCGTCCAGAAACTTTCCAAGAGGGAACTGGAGAGGATGGATCTGACATCAGACGTCGATGTTGCTAACCCCTTTGCTCTGGAAGCCAGTTTGGATGACGAAGAGTGCGAGAAGAAATCCTACGTCAACGGAGGCTTCACGGTCGACAAGACAGATGCCATCTCCTTTACCGAAACCTCTCAGTTTTAGCCTGTTGGTTGGTTCAGAGGAGCAGAGAAAGTGCCATGCTGCTATGGATGGAAAACGGAAAACCTTCCATCACGTGTTAGCTCCCTGACAAGAGTGGAAAACTATCCAACCAGACCCATCCTTAGACATCAGAAATCACACTATAGCAGCCTCCATTACGCTTATCCAAGATGATCACTCTTCATGTTGGACATTTACCATCACGACTAGATTAAAGTGCTTCCTTCTTACACTCAAATTGTGCCAAGATTAAAAAATGtcagttttctgtgtgtgtgtgtgtgcgtgcatgtgcatgtgcgtgtgcgtgtgtttgcgggtgtgtgtgtgtattttgcaaaaaataaattatcaaTTTAACAcaggtaaaaacaaaacaatacccAAATCCTACTTTATTTGCTCCTTCATTGGACAATAATTCTCTAAAATTTCTAAATGGTCTTTATTGAGTGGGTGTTGTTGAATGGCTATGCCCCCATAATGCACTGCTTGTATATCTTTGTCTGTATATTTAAACTGTGCCAAACATATAAAGAGGTTTTTCACCAAGTTGAA

Function

GO: NA

KEGG:

id description
K05612 SLC1A1, EAAT3; solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189407 lncRNA downstream 19578 1530235 ~ 1530950 (-) True G140454
TU189404 lncRNA downstream 28689 1519821 ~ 1521839 (-) True G140451
TU189390 lncRNA downstream 65229 1482802 ~ 1485299 (-) False tada2b
TU189389 lncRNA downstream 67823 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA downstream 67861 1481913 ~ 1482667 (-) False G140437
TU189451 lncRNA upstream 49135 1623259 ~ 1639611 (-) True tspan5a
TU189455 lncRNA upstream 88897 1663021 ~ 1663252 (-) True G140492
TU189483 lncRNA upstream 145801 1719925 ~ 1725333 (-) True G140514
XR_005641667.1 lncRNA upstream 201713 1775837 ~ 1779726 (-) False LOC120573239
TU189515 lncRNA upstream 201817 1775941 ~ 1782596 (-) True LOC120573239
XM_039822938.1 mRNA downstream 50212 1492274 ~ 1500316 (-) True LOC120573289
XM_039822937.1 mRNA downstream 62102 1482789 ~ 1488426 (-) True tada2b
XM_039822701.1 mRNA downstream 120811 1018258 ~ 1429717 (-) False sorcs2
XM_039823148.1 mRNA upstream 51767 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 51767 1625891 ~ 1649432 (-) False tspan5a
XM_039823278.1 mRNA upstream 86013 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA upstream 86013 1660137 ~ 1661012 (-) False LOC120573508
XM_039822828.1 mRNA upstream 175395 1749519 ~ 1774918 (-) False aco1
TU189195 other downstream 1098858 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1123044 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1131522 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1133447 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1134660 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 477357 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2580800 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2700527 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2700527 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2700527 4274651 ~ 4275274 (-) False G141027

Expression Profile