RNA id: XM_039823253.1


Basic Information

Item Value
RNA id XM_039823253.1
length 2384
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120573495
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35653002 ~ 35675644 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttcacactggagagaatctACACaggtgtgatcaatgtggggcagctttcacactacAGTGTACCCTAAAAaaccatcaacgcattcacactggagaaaagccgtacagctgtgatcaatgtgggacaGTTTTCATACTACAGAGCAACCTAAAaagacatcaacgcattcacactggagagaagccgtacagctgtgatttatgtggggcagctttcacacgaaAGAGTTACCTAAAAAACCATCAAAGCATTCATACTGGACAAAATCttcacagctgtgatcaatgtggggcaacTTTCGCACGAAAGAGTGACCTAAGAAGACATCAaggcattcacactggagagaagccgtacagctgtgatcaatgtgggacaGCTTTCACACAACAAAGTGACCTAAAAAAACATCAACGCCTTCACACTGGACAGAATCttcacagctgtgatcaatgtggggcagctttcacacaccAAAGTAACCTAAAATTACATCAactcattcacactggagagaagccgtacagctgtgatcaatgtggggcaacTTTCAGACGACAGAATGACCTAAAAAAACATCAAcgccttcacactggagagaatctTCACAgttgtgatcaatgtggggcagctttcacacatcAGAATATCCTAAAAgtacatcaacgcattcacactggagagaagccatacagctgtgaacaatgttggaaaacattttctcataatAGCAACCTTAAAACCCatcagcgcattcacactggagagaagccgtacagctgtgaacaatgtggtaaaactttttctcagagtggtcaccttaaaagacaccagctcattcacactggacccaaacgtcaccactgtcagcactgtgacaaatccttcacaacatcaacaaatttaaagattcatcagagagttcacactggacagaatctacacagctgtgatcaatgtggggcagctttcacactacAGAGTACcctaaaaacacatcaacgcattcacactggagagaagccgtacagctgtgatcaatgtgggaaaacttttaCTCAGAGTGGTAACCTAGAAATCcaccgacgtgttcacactggagagaagccgtactggtgtgaacaatgtgggaaaactttttctgGGAGTGGTCACCTTAAGaaacatcaacgcattcacactggagataaaccttacagctgtgatttatgtggtaaaaccttttctgagAGTGGTAGCCTTAAAAGACACCAACGttttcacactggagagaagccgtacagctgtgatttttgtggtaaaaccttttctgagAGTGGTAGCCTTAAAAGACACCaatgtgttcacactggagagaagccgtactggtgtgaacaatgtgggaaaaccttTTCTCGGAGTAGTCACCTTAAATATCACCAGCGCGTTCACACTGCCTCGTTGTGAACATGTTTcagagccaagctgtttcctcctgcctcctcctcatgccctgatagctgtgttgttatattctctccacattgaaggctgaccagcGGTAACTTTATCTTCTGAACACCATGCATGTTATCCTGGCTACGACTACATATTACACTCCCTCCCTTTTGAAGGGATTAATTTCACtcaaaattagctttttttccTGTAATACAATATGTTGAGTTCAGGGTTCAACTGCTAACGCTATTTAACTAACGCTGCAACAAAGGAGTATTTgttcttaatttaaaaaatcccATCACTGTTTTCTATGGTGATGTCAAATTGCTGAAATATATAGTTTATTGTCCTTTTTAAGATGATAAAAAGAAGCAAATTTTCATAACTAGAAAGCATTAATCAGAacatgtctgctgctgctgcttaaaaaatgacttgaacAGTTAATAGGCTCGTTTGAGAcaagccagatctgcgcagaatcgatcactggccatcgccgcccaatgcatgctgggtagatttgtgtctgacttgatccaacttgatcccgacttgctctgacatcATGCACACATGGGCAACGATAAtttcacgagatcaaggcggccgcagtttttagagccagacgccgcagttgctctccaccgactgcaagacccaggcggacccagggcatgctgggaaacaccggcctctcagctgatctaacagctgattggttcaaaatcgactcaacatgatgacgtttatataacctttttattgattttgatttggagggattttaactgctatgtGTCTGATTGAAATGCTTGTGTACAGAACAAATGTGTGActgatagttacgtttagaagtcagagaggctaaatctgatcagattacagatcatctacagtctgttggtaattaaaatcagcaacagatcacatgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201722 lncRNA upstream 101060 35493204 ~ 35551942 (+) True G149184
TU201716 lncRNA upstream 193068 35459376 ~ 35459934 (+) True G149180
TU201703 lncRNA upstream 223959 35426249 ~ 35429043 (+) False G149172
TU201708 lncRNA upstream 223959 35426249 ~ 35429043 (+) True G149172
XR_005641584.1 lncRNA upstream 441726 35196966 ~ 35211276 (+) False LOC120573010
XR_005641573.1 lncRNA downstream 3162 35678806 ~ 35679539 (+) True LOC120572998
TU201762 lncRNA downstream 3205 35678849 ~ 35679153 (+) False LOC120572998
TU201775 lncRNA downstream 24882 35700526 ~ 36038269 (+) True G149211
TU201745 lncRNA downstream 54246 35729890 ~ 36017601 (+) True G149194
TU201746 lncRNA downstream 55830 35731474 ~ 36017601 (+) False G149194
XM_039823252.1 mRNA upstream 78734 35560450 ~ 35574268 (+) True LOC120573494
XM_039822452.1 mRNA upstream 177344 35467836 ~ 35475658 (+) True LOC120572927
XM_039822210.1 mRNA upstream 323782 35324383 ~ 35329220 (+) True LOC120572777
XM_039822229.1 mRNA upstream 337583 35290137 ~ 35315419 (+) False LOC120572790
XM_039822245.1 mRNA upstream 385396 35265633 ~ 35267606 (+) False LOC120572797
XM_039822478.1 mRNA downstream 124081 35799725 ~ 35801933 (+) True LOC120572944
XM_039822374.1 mRNA downstream 140249 35815893 ~ 35820447 (+) True LOC120572867
XM_039822343.1 mRNA downstream 441654 36117298 ~ 36130103 (+) True LOC120572849
XM_039822404.1 mRNA downstream 663987 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 695235 36370879 ~ 36401016 (+) True LOC120572637
TU201707 other upstream 223959 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 367268 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 367447 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 510516 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 524799 35122722 ~ 35128203 (+) True G149096
TU201726 other downstream 112475 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other downstream 441654 36117298 ~ 36122718 (+) False LOC120572849
TU201730 other downstream 447062 36122706 ~ 36262372 (+) False G149187
TU201846 other downstream 664004 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 664004 36339648 ~ 36343478 (+) False LOC120572889

Expression Profile