RNA id: XM_039823286.1


Basic Information

Item Value
RNA id XM_039823286.1
length 3259
RNA type mRNA
GC content 0.51
exon number 25
gene id pik3c3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18612673 ~ 18626072 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGAGGATCGACTACTTTAGCCTGACTGTAGATTTTTGGCTGATGCTGTGTTGTTGTGAAGCtatcaaaaacataaaatcatgCCCGGTGGGGCATCCGTTAAAATAATGTCCATACCTTGAATACAGGCACTCCAAGTAATCTTTTTAAACGTGTGTAAAGACTGATTAAGTGGCTTTTCTTGTGAGCAGTAGTTTAAACGGGGGTTCGCAAAGTGTTTTGTGCTGAGCCGAGGCCTTGTCGCAGACCCAACCGCTTGCAAAGTCCCTTATAACCGTCCGGGGTTTCATGTTGAAGTCGTCAGGTTTTTGTTCAACATTTAGTGTTTCCCCCGTCGGAAGATGGACACTGATAAATTTAACTATGTTTACAGCTGTGACTTGGACATCAACGTTCAACTTAAGATAGGCAGTTTAGAGGGGAAACGAGAGCAGAAGAGCTACAAAGCTCTGCTCGAGGACCCGATGCTGCGGTTCTCTGGCCTCTACCAGGAGAACTGCTCAGACCTCTATGTCACCTGTCAGGTGTTTGCTGAAGGAAAACCTCTCGCCCTGCCCGTTCGCACCTCGTACAAAGCGTTCAGTACACGTTGGAACTGGAACGAGTGGCTGCGACTGCCAGTCAAGTACCCAGACCTTCCCCAAAGTGCCCAGGTTGCTCTCACAGTGTGGGACATCTATGGGCCTGGCAGAGCCGTCCCTGTAGGGGGAACCACTGTCACCCTGTTTGGCAAATATGGTATGTTCCGGCAAGGGATGCATGACTTGAAGGTTTGGCCGGGTGTTGAGGGGGATGGAGGAGAGCCCACCACCACACCAGGACGCACCAGCAGCAGCCTGTCAGAGGACCAAATGGGCAGACTTGCCAAGtTGACAAAGGCCCATCGACAGGGCCACATGGTGAAGGTTGACTGGCTGGACCGTCTGACCTTCAGAGAAATTGAGATGATCAACGAGAGTGAGAAACGCAGCTCTAACTTCATGTACCTCATGGTGGAGTTTCCCCGTGTCAAAACAAATGATAAGGAATACAGCATTGTCTACTATGAAAAGGATGGAGACGACACATCACCTGTTCTTACCAGCTGCGACATCGTCAAAGTTCCTGACCCACAGATGGGGATGGAGAACCTGGTTGAGAGCAAGCATCACAAACTGGCTCGTAGCCTCCGCAGTGGGCCCTCAGATCACGACCTGAAGCCCAACGCTGCCACACGTGACCAGCTTAATATCATCGTGAGCTACCCTCCAACCAAGCAGCTGAGCTCTGAAGAACAGGACCTGGTGTGGAAGTTCAGATACTACCTCACCACACaggagaagGCCTTGACAAAGTTCCTCAAGTGTGTGAACTGGGATCTGCCCCAGGAGGCCAAGCAGGCTTTGGAGTTGCTGGGGAAGTGGAGGCCGATGGATGTGGAGGACTCCCTGGAGCTGCTGTCCTCCCAGTTCACCAACCCCACGGTCAGACGCTACGCTGTGGCACGCCTGCAGCAGGCAGATGATGAGGACCTGCTGATGTATCTTCTCCAGCTGGTCCAGGCACTCAAGTACGAGAACTTTGGTGATATTCAGGGCGGCCTGGAGCCAGGCAGCAAGAGAGACATCCAGGGACTTTCAGATGACTCCGCACTGGACAGTTCCCAAATCCTGTCTGGCACATCTGGACCTTCCACTGCCACGCAGAAAGGCAAGGAAGGGGCCGACAGCGAGAATCTAGAGCAAGACTTGTGCACATTTCTCATCTCCCGTGCTTGCAAGAACTCCACACTCGCCAACTATTTGTATTGGTATGTGATTGTGGAATGTGAGGATCAGGACACCCAGCAGAGAGATCCTAAGACCCACGAGATGTACCTGAACGTCATGAGGAGGTTCAGTCAGGCTTTACTCAAGGGTGATAAGAGCGTGAGGGTGATGCGGTCGCTGTTGGCCGCCCAGCAGACGTTTGTAGACAGACTGGTGCAGCTGATGAAGGCCGTGCAAAGGGAGAGCGGAAATCGCAAGAAGAAGACGGAGCGGCTGCAGGCTCTGCTGGCCGACAACGAGAAGGTGAATCTTTCAGAGATCGAGCCGATTCCTCTTCCTCTGGAGCCTCAGATTAGGATCAGAGGCATCGTCCCCGAGACGGCCACACTGTTCAAGAGCGCTCTGATGCCAGCCAAACTGATTTTCAAGGCTGAGGATGGAGCCATGTACCCAGTTATCTTCAAACATGGAGACGACCTGAGACAGGATCAGCTCATCCTTCAGATCATCTCGCTCATGGACAAACTGTTGAGGAAAGAGAATTTGGACCTAAAGTTGACACCTTACAAAGTGTTGGCCACCAGCACCAAGCACGGTTTTATGcagtttgttcagtctgttcCTGTTGCTGAAGTCCTGGCTACTGAAGGCAACATCCAGAGCTTCTTCAGAAAGCATGCACCAAGTGAAAAAGGACCATACGGCATCAGCTCAGAGGTGATGGACACCTACGTCAAGAGCTGCGCTGGTTACTGCGTCATCACATACATCCTCGGAGTAGGAGACAGACACTTGGACAATCTGCTCTTGACAAAGACCGGAAAGCTCTTCCACATCGACTTTGGCTACATCCTGGGTCGAGACCCCAAACCACTGCCTCCACCCATGAAGCTGAGCAAAGAGATGGTGGAGGGGATGGGAGGCATGCAGAGCGAGCAGTACCAGGAGTTCAGGAAGCAGTGCTACACCGCCTTCCTGCACCTCAGGAGATACTCCAACCTGATCCTGAATCTGTTCTCACTTATGGTGGATGCCAATATTCCAGACATCGCCCTGGAGCCTGACAAGACAGTTAAAAAgGTGCAGGACAAGTTCAGATTGGACCTGTCGGACGAAGAGGCAGTCCATTACATGCAGAGTCTGATTGATGAGAGTGTGGGCGCTCTGTTTGCTGCTGTGGTCGAGCAGATACACAAGTTTGCTCAGTACTGGCGCAGATGAGCAGAACAGAGACTGCTGAGAAGAGGCTGAACTGGATCGAACTTTTGCAGCACGACCACATGATGGTACGGCTCTGAGCCGACTTATACCATGTGTGTATGAGAGGACGAATGAAAGAAACCCAATGACACTGGTAAAAAGGCCAAGAATGCACTGCCAACCTTTACTGCAAGATGAATAAACAAGGACATTGATGTCTTTGTTTGCTTATGTACATATAATgtatattaattattaaatgaatgaatgaaatgtatGGCCAAATAAAAGACTGTTGATACAAGTGAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005524 ATP binding molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194639 lncRNA downstream 73092 18536147 ~ 18539581 (-) False c14h4orf48
XR_005641738.1 lncRNA downstream 362616 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 439652 18169293 ~ 18173021 (-) False mrpl52
TU194367 lncRNA downstream 593367 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 610202 17992145 ~ 18002471 (-) True LOC120572704
TU194691 lncRNA upstream 74138 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 202393 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 309904 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 336795 18962866 ~ 19056782 (-) False clcn3
XR_005641466.1 lncRNA upstream 367398 18993469 ~ 19001392 (-) False LOC120572676
XM_039821643.1 mRNA downstream 51620 18551540 ~ 18561053 (-) True faah2b
XM_039821355.1 mRNA downstream 73050 18536143 ~ 18539623 (-) True c14h4orf48
XM_039822760.1 mRNA downstream 89932 18498740 ~ 18522741 (-) False nat8l
XM_039822759.1 mRNA downstream 89937 18498740 ~ 18522736 (-) True nat8l
XM_039822756.1 mRNA downstream 176475 18431393 ~ 18436198 (-) False LOC120573208
XM_039823402.1 mRNA upstream 6007 18632078 ~ 18637992 (-) True rgp1
XM_039823403.1 mRNA upstream 6007 18632078 ~ 18637619 (-) False rgp1
XM_039821567.1 mRNA upstream 39120 18665191 ~ 18701577 (-) False LOC120572304
XM_039821565.1 mRNA upstream 39120 18665191 ~ 18701577 (-) True LOC120572304
XM_039821566.1 mRNA upstream 40026 18666097 ~ 18701577 (-) False LOC120572304
TU194667 other downstream 15442 18595102 ~ 18597231 (-) True G144258
TU194399 other downstream 488983 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 551518 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 791596 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 859684 17744954 ~ 17752989 (-) False tbc1d19
unassigned_transcript_702 other upstream 68628 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 70025 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 72191 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 72787 18698858 ~ 18698931 (-) True trnan-guu_14
unassigned_transcript_706 other upstream 73354 18699425 ~ 18699497 (-) True trnak-cuu_4

Expression Profile