RNA id: XM_039823311.1


Basic Information

Item Value
RNA id XM_039823311.1
length 534
RNA type mRNA
GC content 0.61
exon number 2
gene id LOC120573525
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 906545 ~ 913680 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgccgccttggACCTGCAATCCTGCCAGCTGGGGGCGGCGGAGGTGGAGAGTTCCGTGGCCGGTGGCGCGTCTCTTTCCCGGGCAGGAATACTGCTTtgcctcgctgctgcgccggtccccgctcatccagatcggaccggccaaagacagagtggtgatcggcaggatctatcacgtagtccaggacgacctgtatgtagATTTCGGCTGGAAGTTCCACTGCGTTTGCCGGCGGCCGGCGGACGGAGAGAAGCTAAAGCGGGGCAGCAGGGTCcgtttgcggctgcaggatctggagctcactgcccgcttcctggaagccaaaaccgacaccacgctgctggaggcccgggccgtactgctgggacggctggagggaagggATGCTAGGGTGAAGGAGTTTAGAACCCTTGACCTGATACCCGCTCACCTACGAAGCTCAGCCAATGTCTCGGTGCAGCTGTGCTGTGCATTGGTCAATCTTCAGAACCCCCTAATATGGGAAGTAGGCAGCACCCTTGCTGAAAAATAG

Function

GO: NA

KEGG:

id description
K17407 MRPS28; small subunit ribosomal protein S28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189276 lncRNA downstream 2906 903408 ~ 903639 (-) True G140348
TU189266 lncRNA downstream 30199 875822 ~ 876346 (-) True G140338
TU189236 lncRNA downstream 159685 746588 ~ 746860 (-) True G140314
TU189230 lncRNA downstream 272700 633646 ~ 633845 (-) True G140308
TU189229 lncRNA downstream 273598 632727 ~ 632947 (-) True G140307
TU189286 lncRNA upstream 38476 952156 ~ 952472 (-) True G140355
TU189291 lncRNA upstream 99285 1012965 ~ 1013182 (-) True G140360
XR_005641655.1 lncRNA upstream 122392 1036072 ~ 1036678 (-) True LOC120573176
TU189338 lncRNA upstream 153777 1067457 ~ 1067906 (-) True G140398
TU189341 lncRNA upstream 203306 1116986 ~ 1154711 (-) True G140400
XM_039823400.1 mRNA downstream 299827 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA downstream 299827 600634 ~ 606718 (-) True LOC120573590
XM_039823396.1 mRNA downstream 768308 135443 ~ 138237 (-) True LOC120573587
XM_039822700.1 mRNA upstream 104578 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 104578 1018258 ~ 1429717 (-) False sorcs2
XM_039822699.1 mRNA upstream 104578 1018258 ~ 1429717 (-) False sorcs2
XM_039822698.1 mRNA upstream 104578 1018258 ~ 1429717 (-) False sorcs2
XM_039822697.1 mRNA upstream 104578 1018258 ~ 1429717 (-) True sorcs2
TU189195 other downstream 454875 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 479061 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 487539 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 489464 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 490677 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 1137801 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3241244 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3360971 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 3360971 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 3360971 4274651 ~ 4275274 (-) False G141027

Expression Profile