RNA id: XM_039823328.1



Basic Information


Item Value
RNA id XM_039823328.1
length 722
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC120573539
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8099654 ~ 8102359 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTAAACGCAGAATGAGGAACTTCACCTTGATAACAGCTTTACTTCTCTGCAGCCTCAgcTGGATCTCTGTCTCAGCTTCTGAGTCTCACACTGTGGAGGTCCAGTCTGGTGGAGACGTCACTCTGATGTGCTCCAACATTTCCAGGGTTATAACTACAACAGAATGGTTCAGAGTGATCAACAGAACAAAGCCCAGCTGTGTCTCCTCTATGAACCCATATGATAGCAATGCTTCCTTCTGTGATGGATTTCAAAATGGATTTGAGATGAGATCCAACATCTCTACTGTCTTTCTTAAAATCAAGAGAGTGGATTTATCTGACTCTGGACTGTATTTCTGTGGAATTTACATAGGAAGACATACAGTCATTGTCAATGCAACATATCTAAAAGTTCAAGGTGACAGTGAATCTGATTTTGGAGTGGATTTACATACTAAAAAGGAGTCTGATGGAATGACAAACGTCATGAGTGTGATCCTGGGTGCTCTGACTGTTCTGACTGTTTTCCTCACTATAGTCATCATTGTTCTGGCTGTTAAAATCAGTAAACTTCAGTCAGcTGTGAATGAAGAACTGCAGCCAGAAAGAAACAAGGATCTGGGCTCAGATGAACTGAACTACGCAGCTCTAAATTTCCAGCTGAAACCCAAAAGAAGCCGCAGGCCTGCAtcagagagagactggagccACATGTTGTaTGGTGTGTGGAAGGAGTCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191500 lncRNA downstream 17999 8080864 ~ 8081655 (-) True G141974
TU191454 lncRNA downstream 89795 8006593 ~ 8009859 (-) True G141932
TU191453 lncRNA downstream 92597 8005828 ~ 8007057 (-) False G141932
TU191429 lncRNA downstream 112213 7935230 ~ 7987441 (-) False G141913
XR_005641441.1 lncRNA upstream 119480 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 125362 8227721 ~ 8228114 (-) True G141995
TU191532 lncRNA upstream 125821 8228180 ~ 8250562 (-) True G141996
XR_005641437.1 lncRNA upstream 155173 8257532 ~ 8258820 (-) True LOC120572405
XR_005641434.1 lncRNA upstream 194603 8296962 ~ 8298057 (-) True LOC120572402
XM_039821656.1 mRNA downstream 20021 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA downstream 20021 8075817 ~ 8079633 (-) False LOC120572369
XM_039821657.1 mRNA downstream 20022 8075817 ~ 8079632 (-) False LOC120572369
XM_039821654.1 mRNA downstream 20022 8075817 ~ 8079632 (-) False LOC120572369
XM_039821652.1 mRNA downstream 20022 8075817 ~ 8079632 (-) True LOC120572369
XM_039821702.1 mRNA upstream 5288 8107647 ~ 8112684 (-) False LOC120572400
XM_039821680.1 mRNA upstream 29526 8131885 ~ 8134082 (-) True LOC120572382
XM_039821650.1 mRNA upstream 32140 8134499 ~ 8136411 (-) True LOC120572367
XM_039821674.1 mRNA upstream 38308 8140667 ~ 8143566 (-) True LOC120572376
XM_039821651.1 mRNA upstream 41994 8144353 ~ 8146112 (-) True LOC120572368
TU191428 other downstream 113704 7982937 ~ 7985950 (-) True G141913
unassigned_transcript_685 other downstream 262360 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 312059 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1728561 6353464 ~ 6371093 (-) True LOC120572256
XR_005641432.1 other upstream 5288 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 5288 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 362723 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 414664 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 414664 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile