RNA id: XM_039823361.1


Basic Information

Item Value
RNA id XM_039823361.1
length 8268
RNA type mRNA
GC content 0.45
exon number 9
gene id htr2cl1
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 21537147 ~ 21683352 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcCAGTCAGGAGTCGCTTTCTCTCATCCCCTCCGCGCTCTGGTCTTCGGTGTTAAAACTTTCCTTAAAGGAGACGGATCTTTCAGCATCCTAGTAAACAAATGAACCAACAGTTATTGTTTTGCCTGGAACTTTGAGAAGGATTTACTGTCATCCAGTTTCCTGTTTTGGTGCAGGACGCGTCCCGTTTCGCACCGGACCAAAATGGACCGCAGAACGTGTCCGGATCGTCCGCACTGGTCCTCTGGCGCTGTGTGCGGGACACACTGAAAAGAAATCCAGACTGGAGGTGGACTGTACCTACACTCACTGCCcgttctctttcctcctctagTTTATGGCTGCGGGCTTTAATGCCTCCGCTCAGAAGATATAGCCCAAATCAGAAGCGGAGAATTATTCCTCAACCCGAAGAGAGGACATGGACATACCGTAGCCAGCGCTCACAGATGAAAAGCAGGATGTAGCtataaaaagagggacatcacAAACTGCAGGGACGCGGAAAGAACAATCGAATGTCTTCACGGACAAGAAGCACACGTCAGAAGTTGAGGTTCAGGTCTTAAGAAGATCCAAACAACACTTATGTGAATGTAACAAAGCACTGAGGCAGCTCAACAAAGCGGGCTTGTTCTACATGAAGATCAAATCAACATTCGGCAAGGACAGATGGATGATACTTATCCCTCACTCCGGAGGTGTGGAGTGACAGATGACAAAGGCATTGACAcggtgggagagagagaaaaagagagaggtaaTGTCGGAAAGGGTTCCTGCCGCCCGTAATGGAAAACAACTGCAAAGGTCAGACATCGATTGGGAGGCTAGAAGAAATCAACCTGATCATCAACTCTGACCTGAAAGACGTAACTTGCAACACCTTGGATACCACAGACCACAGCAGCAAGATTTACAACTGAATGCAGATGATAAAACTGAAATCTCATCCACAAACTAACTAGCAAAGATCTGGCACACAGCAGACAGCAGCCATGGATATTAGTAAACCAATCTTCAGCAACTTAGAAACTGTTAGACTCTCATTCACATTAAGAGGTGGATTTGACTGATCCACCACAAAGCAACACGGGACATTTTGGCTCAGCATACACCTTGAGAACGTGTCGCCAATGATGAATTGGCAGGAAATGGGAGATTCAAAGCTCAGGGAACAATCTGAGGCTGTTTGCAGCTAGCAAGACTATTGgaatacaatataaaatcaaAAACACTTTTAGCCTGGTCCTCCCAATCCCCTCTTCCCTGTCACTCCCCGTCCCTGAAGTTGCTTCCTTACTGTTTTCCTTACTTCCCCTAGATCCTTATTAATGGTGTTCTGTTGGTATTAACCATTCATTTACACACTTCAAAACTCTTTAAATAAGTCTTGATCAATGCTGAGCACATCTCTTTTTTCACCTTCTTCTTCCTGCTGGTGAAGAAGGTGAATTAAAATCAGGGGAGGCCTCTTTCAACCACCAATAGGGTAAGGGTCTCATTTTGGGATGGGCGGCCCGGCAAGGGCTCTTCTTGGCGGGTTCAGCACCACCACTTCTTCCCTGGAGGTTGGAGGTCAGATGGCTTGGCCAAGCAACAACCCCCTGGACCTCAACCAAACCCTGTCATGGGGGATCGGGCTTGGAGGCAGCGGTGGAGGTGCGGCAGCCATGAGTGCAGGTCTGGACAATTTCACCCAGGAGTCTGTCACCAGGACAGTGATGAAAGAGAAGAACTGGCCGGCGCTGCTCATACTTGTCATCATCGCACTGACAATTGGTGGCAACATCCTTGTGATCCTGGCAGTGTCGCTGGAGAAGAAGCTCCAAAACGCCACCAACTTCTTCCTAAGGTCGCTGGCCGTGGCGGACATGCTCGTAGGCATCCTAGTCATGCCGGTCTCCCTCATCAACATCCTCTATGACTACGCCTGGCCTCTCCCCAGCGCCCTGTGTCCCATCTGGATCTACCTGGACGTGCTGTTCTCCACCGCCTCCATCATGCACCTGTGTGCTATCTCCCTGGACCGATACGTCGCCATCCGCAACCCCATCGAGCACAGCCGCTTCAACTCCAGAACCAAAGCCATGATGAAGATCGCTGCTGTCTGGACCATATCTATAGGTGTGTCGATGCCTATCCCAGTGATCGGCCTCCACAACGAGGACAAGGTGTTCGTCAACGGCAGCTGTGTCCTCAACGAGGAGCGCTTCATGCTGATTGGCTCCTTCGTGGCCTTCTTCATCCCACTGGTCATCATGGTGGTGACGTACTGCCTCACCATACAGGTCCTCCAGAGGCAGGCCACTGTCTTCCTGTGCGAGGCAAAGACGTCCTCCCAGCAGCCATTGCACACACCAGCAATGACAAATACATTGCAGCCTCCACCCAGCACCTTCCACATCCCCCAGATCAACACACTTGCTGCTTCAGACTCACAGGAGTTAAAGACCCCGCTCCCTCAGAGCAGAAGAAACACCTTGAGCTGTCTGAAAGGAGCCGAGCCCGGCATGCTGCTCAGCACCTCCAAGTCAGATAGCATAAGCATCATTCCCAGCTCGGAGGTGGCGTCTCAGCTCAGCTCGCCAGCAGCGGGACCGGGGCGGAGCGACACGTCGGGTTGTCACGGGCGACGGGGGATGATGCAGGCCATAAAGAACGAGAGGCGGGCCTCCAAGGTCCTGGGAAtcgtcttcttcctcttcctcatcatGTGGTGTCCCTTCTTCATCACCAATGTCACCTTCGTCCTGTGCCGAGGCTCCTGCAACGAGTCGCtgctcaacgacctcctcaacGTCTTCGTCTGGGTGGGCTACATCTCCTCCGGGGTCAACCCTCTGGTCTACACGCTCTTCAATAAGACCTACAGGAGAGCGTTCTCCAGCTACATCAGGTGCCAGTACAAAGTGGGGGCCAACGCAGCCGGACAGAGTTGCAAAACCCTCCTGGTTCCCCCGCCGTGCTCGTCGCACGCCGTGACCCCTCTGCTGATGGGCAGTCATGGGAAAGCGGGCATGGACCGCAATAGTAACTGTCACAACGGCGGTAGGGGGGACAACGGGAGGCTGACGGTGGACCCGGATGACATGACAGATGACGAAACACAAATCGGAATAGTGTCGCACAGCCTCTCCGAATGCCACAACATCGACATGCTTTCGGAAACGGAGCCGGAAACGGAGGTGAAGCAGGAGCTGTCACTCATCAGCTACAGCCCCACCTCCAGAGAACACACCAGCAGTGTGTGATtgcgtgttttttttgttgtttaatgtcttcttttttttttaacctgcagACGCTGGTGCCGAGCGACGTTTCGACAAGCTGGTGCTGGAAGCCTACAGCTTTTTTTATTGGCTGTTAACCTGCAGTAGGTCCTTTTTATTGCGAAAGGACTAATCTCGGTTTGAGGAGCCTTATCCCCAGCCTGGAGTGCATTACTTAGAAATGTATGAGCTAAATCAGATTACGAGAGAGCCTCTGAGATGAAAAGGTTTTGGAACGAAAGACaatatttgttttctatttggTGTCCAAATGTTGGTTTTTCATTACACAAAGGGAGGATGAACGCTGTGCTCTGCAGTCAGTGTGTTGTACTTCATGGGGACTAAGGTACCAGCTGAGATCCAGACAGGGTCGGAGTGCATGTGATAAGAGGGCAGTCATTGAAGAGCTTCTTGTCATTGTTGACCTGTTATGAAGTCCTTCTGATGCAGGTTACAGAGTCAAGCGCCGACCGCTGACGTCGACGGGGTCAAACGACGACTTCACGCCTTCACACGAGTCCAAATGCAGTCCGAGTCTCTGGTTTATGTGGATTCTCTCCACACCGAGCAAGCTAAACCAAATCTATTTTTGTGCCGGTCAAGCTTAACAGTGACAGTCATACAAATGTACCTGAATGAACCTTTCCAGCACGTATAATCAAACTATTCAGCCGACAGAAAAGGGATTTCTCTCGAAAAGGGAACTCACTCGAGGCTGCAGTCAAAGTTTGTCTGAGAGCACCAAGATGAAGGAATGTACCACGACCACTGGTGGACTCACAGTGCCATCTGGTGGTCGCTCCACACAAGAGAGGTCACTTCCCTTGGATTGAACAAGGGGCTAAAAGAGCTAAAATCATGGCGCAGGCCTTTGGTCTAACACAGCTGTCAGGCTCTTGCTTCTgatgaccaacacaaccacttAGGAAAGAGTTTAAGTCCCAACTTCTAAAGGTTTTTACTGACAACAATCAATAAAGTTTCAAATAAAAGGGAGCAatctaaaagtaaaaatgtgaaAGTTTTAATATAAGCGTGCACACAAAGGTTTCTCAGATGTCATTCTTAAAAGGaacaaaatatatagattttatgAGCACATCATTACTATCATTTCTATTATAAATTAGCCATCATTATCACTGATTCGCCatcataaaaataatataaaacctCCCCAGCCGTTATCAAATCACACTTACCTTTATTTTCACAAACCCATGGAATTTTGGATGGATCAGCAATCTAATTAATCCAGGAAATCTCTATGTCTATATTTCCCACATCTAATGATGCAAATTCAGCATATGCATCTTTGAGTTTGGTGTCCTACAGGTCAACAATCAGCCACCTGCTTAATATACATATCATATATTATCAGATTACATATCAGAATGTTCACATCAGCTGCGGGCAGAAATCTGGGCTGTTTGAGATTCACAACATCATCTCTGAGGGACACGTTCTTAAATGAACAAGACGTTCTCTGTCATTTACTTTTTAGAAAATGAATGATTTTTATTCAACCATTagatcagtaattttctctccaaAGACCCCTCAGCCAAAATTTGCTAAGACAGTACAGTGAAAGCCAAAGAGAACAGAACGTTTAAGCAATAAGATTTGGATTAAAATAAGATCCATCAGAGCCCTATGTGACATGTATGCTCTAACGATGGGTTTTAGGATGAAAAGCTTGCCAACATCTCCAAGAATTGCAGTTTTGACCCCTAACTTGATGGTTACGAACTTTCTGATCTCTGACTGCTTTACAATACGTTGGGCCTGAGTCAACAGTGTGACTCCAAGACCAAATAGCTTTAGATTTCATCCGTCGCATAAAACGGACAGAAAGTCAATACACTAAGAGACAGGCCCCCTGAGTTTATCAAGACAGGTCACTAACCCTCACAGCTCTGTCACGCTGATTTTCTcgccctccctcctcccacaTTTTATCGACATCTGACAGGCGCCAGGGTTCCCTCCACACTGCATCTCCATTAGCTGAAATATCTGCAGTGTACtgccttaaaaataaataaaaaattcaacGTTGTGTGGATTTTAAAGGTGGCAAATTTAGATTTCTTAGCAACAAGAGAAGATATAGAAGATATAACCTGAAACTCATATGCATATAGATTGGCTTTGTAGATTTAGTTCAATAGAGCTAAATGGTGTGTGTGAAATGCAGTGAGAAAACGTTTTAAGAGATCACTTAAAGGGGCCCTCCAACAGTATTACACGTCAGGTTCATTTTACTTGTCTAACGTCTAATGTTTGtaaaaaataaccctgatgatgtcatagtgACCTCGGTATTTCAGTCTTGCACTTGAGACTAACATATTTTAACAGAAACTCTTTAAAACTGGAGGGTGTGGAAGATGTGGGTAATTAGGGGGTCCAATGAAAGATGCTATTGAGTTGCATTTTGGgaattgttgtgtttttggagATTGAGACTAAAAGTCAAGATATCTTAGTCTCAGCTGCTTCGATTTTGACCaatctttgtttaatttgtctCTTTTAATTCTCTTAACGTAatggaagtgcaatactaaattgcTGGGATACCCCTTTAAATGCAAAACATACTGATTGACACAGTTAATTAAGTTTTCCTTCCAGCCTAGCTTTTGTCTTATCAAAAGTAGATGTTAGTAGTCACTTTCCCCAGTGAACAATCATTCATTTTGGTAATACTCCCTACAGCCATGAACAGCTAaaattacaaaggaaaaaaatcttttttttacccataATCCCCCCTTTAAGGTCAAAGAGCCAATTGAGAGCCTGAGGTCAGCAGCCACCTCTGCATGCAATTAGAATGCAACATAAGTCCTGGGAGTCACTTCATTCTAATTCTGTGCATCTCTGTATAACTCATCCACTATTTGTATGCTACAGACTTACGCAGTGGTCATTCGCACCACTTTTCTATCCACAAGGAGAGGTCTAAATGAGCTAATGTTGGCAAGCCGGCAACCAATGTTTGGCCTACAAATATCGTGCATGTTTGAAGTGATGTTCAAAAGGTCCTCTCTGCTTCcctcagtttttattttgttctctCTTTAATACTCGAAAAGGAATGAAGCGGCgcaggaaggaaagaaagaataaacaaAGTGCAATCAACAAAATGCACATTGCAAACAGCTTGCAAATCCTGCAGGCATTTTATCTTAATCAAAAtgcaaaatatcaacaatacaaacataaacaaggtaaaaaaactgagaaaaaatgAGGAAGAGAGGACTCTCTGACCTAAGTTGGATGGGTTGTGTTTGATCCATCCAGGTGAGAGCAAGCAAAGAGCTCCAGTCAGGCCAGCCAACTCAGTATGTCGCAATGTAATAACTGTACGTTTCccgtgtacctgtgtgtgtaccaGGCCTGGCTCAAATTGCTATCTGAGATTGATTCAGTaacttttctgtgtttttattactCGTGTCTGGCGCAATTGATTGAATCGTGTTGTCCCTGTAGATGCCAATCCTATCCGGCTCGTGGTCCAGATGGATGAAAGCAATCACTCAGAGAAAGTATCTGGAGGGGTTTCAACTAATAATTCGATCCAGGTCTGGTGTGTATAGAAAAAGTTGGAGCCGTTTAGTGACAAAGTTTCATATTTATAGATTTGAGGAGGGCTgatttgggctttttccctttccagGACTATTTTCTTGTTTCCAGGAAGCACTGGTTCGAGCAAAAACTGCTTCAGAATATTATACAGTGAAATTGAAAATGGTCTGACTCTATGAGTGAGATCTTTCATGCTCAAACAATCAGAGCATATGTACAAGCTTGAAGGAAAAATCCACCCAGTCATTCTTCAGCACAATATTGAAAATTCAGAAAGTGGTTGTTTAATGTGAAGCTGGAGCCAGGAGacggttagcctagcttagcataaacactggaagcaggggaaaaaagctagcctggctctgtccaaagttaaaCTAACTTATAAAAGCGTTATATCTTATTTGTTCAGTCCGCACAAAAACCGAGAAGTTGTGGTTTTGTGCTGgaactatttcttggctgggaGCAGTGATTTCTACCATATCACCCTCCATAAAAGCACAACTTGTCACTTTTACACTATGGTTTTTGTACGAATAAAATGAGATATAACATGTTAGATAGTGAGCTTttggaggtgctggtaggcacaATTTTTTTAcgtttggacagagccagggtTACTGATTCCCCCCTTCACTGTTTTTATGCTAAGTTAACCATCTGCtcattatttacatttatatttacacagacatgagagtggtgtcgatcttctcatctaactctcagcgaGAAAGTGAATAATCCCGAAATTCCAAACCATtactttaaatatttgttaCCTTTCTGTCAGTGGGAAAGGTAGTTAAATTGATAACGGACGTAGCAGGAAGTTTAAACTCACAAGATGTTAAAGTTTTCAAATCTTAATGTAAGAAAAACCTCAACATGCTGACTTTCATAATGCATGGAAAGCAAACGTTTTGCTATCCAAATGAGGGGCCCTCAAGACACTATTGTCCAAACTGCCTTTCAACCCTGCAGCTTCCAAAACCTCTGTCACTAAACGGCTCCGAGTATAGCCAGAGCTGCAGGTTGTTCAAGAGTTTGGCAAACACAACTTGTCCAATGCACCTTCCCTGCATTAAACATTGACTCTTGAACCCTGAGGTGTCGTTTGCATTGACATAGACCAGTTGTCTGGTTTGTCTCGCTCTTGTGTGATCCGGCGCTCATGGGTTAGCTatctttttatgttttgaaCCTCATTCTGTTATGCAgtggctgttgttgtttttttttttataccatttTAATTGTGAATGTTTGTCTATGATACATATTGAGTTTATACAATGATTATGCCATCATCcacacaatgtatttttttttctgtgtgatgctgctatttatttattaaaatattattcTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195944 lncRNA downstream 57174 21475383 ~ 21479973 (-) True G145213
TU195936 lncRNA downstream 99287 21431725 ~ 21437860 (-) False si:dkey-172j4.3
TU195863 lncRNA downstream 375671 21158902 ~ 21161476 (-) True G145141
TU195810 lncRNA downstream 436341 21100149 ~ 21100806 (-) False G145106
TU195809 lncRNA downstream 479348 21055824 ~ 21057799 (-) True G145106
TU196111 lncRNA upstream 359074 22042426 ~ 22042693 (-) True G145330
TU196108 lncRNA upstream 395782 22079134 ~ 22079491 (-) True G145327
TU196105 lncRNA upstream 464226 22147578 ~ 22153086 (-) True G145325
TU196115 lncRNA upstream 472058 22155410 ~ 22155707 (-) True G145334
TU196126 lncRNA upstream 518229 22201581 ~ 22201943 (-) True G145337
XM_039822963.1 mRNA downstream 2743 21488632 ~ 21534404 (-) True zgc:109889
XM_039822109.1 mRNA downstream 98691 21351242 ~ 21438456 (-) False si:dkey-172j4.3
XM_039822736.1 mRNA upstream 197938 21881290 ~ 21890181 (-) False ccnb3
XM_039822510.1 mRNA upstream 317243 22000595 ~ 22039565 (-) False clcn5b
XM_039822509.1 mRNA upstream 317243 22000595 ~ 22039062 (-) True clcn5b
XM_039822511.1 mRNA upstream 317243 22000595 ~ 22026354 (-) False clcn5b
XM_039821773.1 mRNA upstream 362149 22045501 ~ 22126481 (-) True shroom4
TU195937 other downstream 102952 21403855 ~ 21434195 (-) True G145209
TU195935 other downstream 143664 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195934 other downstream 169501 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195751 other downstream 619972 20915641 ~ 20917175 (-) False LOC120573168
XR_005641682.1 other downstream 673258 20827283 ~ 20863889 (-) False LOC120573300
TU196042 other upstream 201403 21884755 ~ 21890072 (-) False ccnb3
TU196043 other upstream 201403 21884755 ~ 21890072 (-) False ccnb3
TU196044 other upstream 201403 21884755 ~ 21890072 (-) False ccnb3
TU196045 other upstream 201403 21884755 ~ 21979426 (-) True ccnb3
TU196109 other upstream 411555 22094907 ~ 22126460 (-) False shroom4

Expression Profile