RNA id: XM_039823396.1


Basic Information

Item Value
RNA id XM_039823396.1
length 2192
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120573587
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 135443 ~ 138237 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTCTGCATCCTAAACGAACGAGAAGTTGAGAATGGCGAAAATTAGCAAGTCAAGAAGATATACCCTCCAAGAGGCAGTGGAAGAGTGTACTCGGCCACGTGAAAGCGACGAGTCAGAGGaggaaatgtctgagaaagacaGTGAAATGTCTTGCATCGACTCCGTGGCAGAGGACATGTTTTTACAGGGAGGAGACATTACTCTCGACAAGAAATGTGATGTAGATATGGATTGGGAGCCAGCTACATCTGCACCAGTGAGCAAGTGGCCACATGGATTGGAGCAGCAGGACAGTTCATCAGGTGAGGAGCTTCCTTTTCCACAGAACAGCAGGAGACCAAGAGGTAGAGGACAAGGTAGTGGAAAAGGGAGAGGCGTAGAGCAGCAGGACAGTTCATCAGGTGAGGAGCCTCATCTTCCAACTCCCCAGAACAGCAGGAGACAAAGAGGTAGAGGACGAGGAAAAGGGAGAGGCTGCAGTCAAGCCAGATCAACCAGCCCATCTGAAGAGAGGTGGAATGATGTTGACGTTCCAGACATCACACCACCACAGCCCACCTTCAGACCCAGAAATGTCCCAGGACCCCAGCTCATACGTACTGCTACGTACACAGCCCTCCAGTTGTTTCAACTATTTTTTACCAACTCTGTTTTGAAGACAATACTTCAAAACACCAACAACTGTGGATCAACACACCATTCAACACCCTCTATCCCGTGGATTGATCTGACATTGCAGGACATGTTTGCATTCATGTCTTTAGTTGTTTACATGGGTGTAGTCAAATGCTTTTCTTTCACTGATTACTGGCGTGGGGGTCATCTTTATAGCTTGCCGTTCCCGAGACGGGTAATGACTGGTAAAAAGTTCCTCAGGATCTCCCAGTCCCTTCACCTCAGCAGCTCTGTGGGGGATGCTGCTAATGATGAAAGGAGAGGCACAGGAGCCTACGACCGCCTGGGTAAGATAAAGCCGCTCTACGAGGAGATGAGGGACTCCTGTAGAAGAAACTATCACCCTGGCCAGGAAATCGCCATTGATGAGCGAATGGTTGCTTCAAAAGCCCGCACTGGTCTGAAACAATACATGAAAAACAAGCCTGTTCGCTGGGGTTATAAACTCTTTGTTCTGGCAGACTCCAGGAACGGTTATACATGGGACTTTTTTGTTTATGAGGGAAAGTGTCAGGGAAACAGTGGTAAGGGACTCAGTTATGAGGCAGTGATGGAGCTAATTGATGTACAGTTGCTGGGCACTGGCTATAAGGTCTTTGTGGACAATTTTTATACAAGTCCAATCCTGTTTCGTGACCTCCTTCTTAAGAGGATCTGGGCATGCGGAACCATCCGCACAAACAGAATCGGATTCccaaggtcaaaggtcaacattCTGGTCTCAAAATCTCCCCGTGGCAGCATACGCTGGATCAGGAATGGCTCCTTGCTCTTTGTTCAGTGGCGAGACACAAGGGATGTTTTTCTGTGCTCAACTCTCCACAGGGCCCACGCAGAGGACACAGTGCAGAGGAGGATCAAAGGTGCAGATGGGCAGTGGCAGCTGAAGGACGTCTCAGTTCCACCAGTGGTGAAGGACTACAACCGGTGCATGGGTGGAGTGGACCACTCAGATGCCCTCATAGGGTATTACAAAGTCCTGCAAAAGACCCAACGGTGGTACAAGACTCTGTTTTACCACTTCATGGACATCGCAATTGTGAACGCCTTCCTCCTCCAGAAGGACCTTGCAATTGGCAAAGGAGAGGTACCTCTGCATCAGAAGGCATTCAGAGAGACGCTTGCAGTGGAGCTGGCAGAGGCGGGGTCTTCCTCCACAGCCACACCCGAACCACCTCCTGCTCCACGTGGAGCACATCACAGGCCAGTGTATATCAGTGGGCACAGCACTGCTGGTCGGCTTAAGTGCAGGCAGTGTCATGCAAAGACACCAGTGAAGTGCTCCACCTGCGATATTCCTTTGTGTTTTGTCGCTGGCCGTGACTGTTATAATGACTGGCATGTTGCCAGTAACCTGTAATTGTAAATACTAGTACAGTggctgttgaaaatgtgcctgcagcacatatctgcgttcatcaaccaccagatgcggaccgtgtgtgtctgtgtgcgcgcaaagagagaaggagagattgTGCTGTCTTATGTCATATGATCATTAACTAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189118 lncRNA downstream 91238 44004 ~ 44205 (-) True G140202
TU189154 lncRNA upstream 28721 166958 ~ 167223 (-) True G140233
TU189155 lncRNA upstream 30712 168949 ~ 169161 (-) True G140234
TU189157 lncRNA upstream 32335 170572 ~ 171003 (-) True G140236
TU189158 lncRNA upstream 32937 171174 ~ 171380 (-) True G140237
TU189159 lncRNA upstream 33222 171459 ~ 171668 (-) True G140238
XM_039823400.1 mRNA upstream 462397 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 462397 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 768308 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 880021 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 880021 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 241274 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 241930 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 243463 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 244539 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 245203 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile