RNA id: XM_039823402.1


Basic Information

Item Value
RNA id XM_039823402.1
length 2071
RNA type mRNA
GC content 0.47
exon number 9
gene id rgp1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18632078 ~ 18637992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCAATTTTTTTACTGGAATTCTAAATTGCCGTTTCACtgtgtaaaaacatgttaaattaagaTTGAGACAACACTAGGATGTTAAACAGTGTATATACTTAATAAATAATGTGTGTTACTGATACTTGCTTTTATTCTTTATGAGTTTTGTTTTCATTGGTTCGTGATTGGTCGAACAACAGCGGATATAGAACATCTGTTTACTGCTTACTGTAGCTGGGATGCTAACTAACCAGATACGCAATGTCTAGCTAGTTCTTCGAGAAACACAGTCACGTTTGGTATCGTTTTCTTCTAGAAATAAATTTAGGTCCGCCCTGGGATAAGACAGCGTAATTGTCCGCAGTAACGTTTGAGGCCAAGATGATCGAGGTGGTGGCCTCCATGGCCAGAGGCCCCGTGTTTCTCGCCGGGGAGCTCATGGAGTGTCTCATAACATTCACCAACCCGATGTCCCACCTCTCCACTTCTGCCACCAGTGAGATGCTGGCATGGGCCAGTGCCCAGATCCACTGCCAGTTTCATGCTAGTGAAAGCAGAGTGGCCCTGCCGTCCCAGGGCAACAAACAGGATGTCCAGGCTGAGAGCAACACAGTGCTTATTCCAAACAGAGGAGAGCGAGGTCAGTGTGTGCTGGACACACCACCTAAGATATTATTCTGTGACCTGCGCCTGGACCCCGGGGAGAGCAAAacctATTCATACAGTGAGATCGTACCCATAGATGGTCCTCCTAGTTTCCGTGGTCAGGCGGTGAAGTACGTCTACAAACTGACCATCGGCTGCCAGAGAGTCAACTCTCCTATCAAACTACTCAGAGTTCCCTTCAGAGTGCTGGTTCTGCAAGGCATGCCGGAGCCTCCATTTCCACAGGATGAGGAGGTTTCCCCTTCCAATCCGTTCctagaggaagaggaagcgaGCCGCAGGGATGCCCGGCCTCTGGAGAGAGCACTGGACATGCTGATGGTCACCACCTCGAGACGCTGTCCACACATGTTTAATATCACCAATATGCGTGGGAAAGTGGCAAAGTTCTGCATCTTCAAGACGGTTTACAGACTCGGGGAGGACATTATCGGCACATTCAACTTCTCAGAGGGAGACATTCCTTgcttgcagTATTCAGTGAGCCTTCAGAATGAAGAGGAGATCCAGCAGCAGTACCAGCGGCGCCCCGGACAGGTCATCAGTGTGACTGGACACGGGCGACACATGGAGTCCTGCCTTCACACCGCCTCCAGCCACTTCTCTCTCCCCATCCCCCTCAACGTCACGCCGGGTTTCAGCACAGACATAGTGATGCTGAGATGGCGCCTTCACTTTGAATTCGTCACTGCCCGGGAGCCTATGGAACCGCCCACAGTTCTGCAGAACCAATCAGAGGTCACAGTTTGGGCCGGGGCGGAGCATGTCGACGTGGATACCTTCAGCTGGGATCTGCCTATCAAAATCCTGCCCACCAACCCTGCCTTGGCATCCTACATGTCCCACTTTTCAGGGACCAACAGCATTActatttgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgactgtgtgtgtggggtgactgtgtgtgtggggtgactgtgtgtgtgttacagagaGAAACAGTATTTTTAGCACAAAGATGCACATTATAGGAACAAAGGAGCATTATGATTTTGTTGTTTGcattgtacagtatatgctgaGCCAGTGATTAGTTCCATATGTATATTATTCaacctatgtttttttttttttcatatgcaTTTCGCGGCGCATCTTAACTTTACGTATTTCTTTTTAGACCTCATGACGTGCAACTGTCTCTGTGGTAGCTGtgcatttctgtatttatttaatttttgatTCCTTTACTCATTTGCAGACTTTTTcgtatttaaaatatttttactgTTTAACTTTTTCTTTCAGCTTGAGCAAAGGCTGTATTGAGATGTAAATACtacaagaggaaaaaaaaattaaaagtgtgATTTAAATTTGATA

Function

GO: NA

KEGG:

id description
K20477 RGP1; RAB6A-GEF complex partner protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194639 lncRNA downstream 92497 18536147 ~ 18539581 (-) False c14h4orf48
XR_005641738.1 lncRNA downstream 382021 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 459057 18169293 ~ 18173021 (-) False mrpl52
TU194367 lncRNA downstream 612772 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 629607 17992145 ~ 18002471 (-) True LOC120572704
TU194691 lncRNA upstream 62217 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 190472 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 297983 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 324874 18962866 ~ 19056782 (-) False clcn3
XR_005641466.1 lncRNA upstream 355477 18993469 ~ 19001392 (-) False LOC120572676
XM_039823285.1 mRNA downstream 6006 18612673 ~ 18626072 (-) True pik3c3
XM_039823286.1 mRNA downstream 6007 18612673 ~ 18626071 (-) False pik3c3
XM_039821643.1 mRNA downstream 71025 18551540 ~ 18561053 (-) True faah2b
XM_039821355.1 mRNA downstream 92455 18536143 ~ 18539623 (-) True c14h4orf48
XM_039822760.1 mRNA downstream 109337 18498740 ~ 18522741 (-) False nat8l
XM_039821567.1 mRNA upstream 27199 18665191 ~ 18701577 (-) False LOC120572304
XM_039821565.1 mRNA upstream 27199 18665191 ~ 18701577 (-) True LOC120572304
XM_039821566.1 mRNA upstream 28105 18666097 ~ 18701577 (-) False LOC120572304
XM_039823086.1 mRNA upstream 204084 18842076 ~ 18845520 (-) True ankrd53
XM_039821855.1 mRNA upstream 240129 18878121 ~ 18886053 (-) True si:dkey-185m8.2
TU194667 other downstream 34847 18595102 ~ 18597231 (-) True G144258
TU194399 other downstream 508388 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 570923 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 811001 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 879089 17744954 ~ 17752989 (-) False tbc1d19
unassigned_transcript_702 other upstream 56707 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 58104 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 60270 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 60866 18698858 ~ 18698931 (-) True trnan-guu_14
unassigned_transcript_706 other upstream 61433 18699425 ~ 18699497 (-) True trnak-cuu_4

Expression Profile