RNA id: XM_039823431.1


Basic Information

Item Value
RNA id XM_039823431.1
length 6957
RNA type mRNA
GC content 0.54
exon number 40
gene id chd3
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17906100 ~ 17949657 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAATAATATAGTCAGCCATTTTTTATGTAAGGGGATTTTTTCTTATTGGGGGGgggttgttaaaaaataaatataagagGGCGGCCATCTTTGTTGCTCTGCCTAgtgtaaaatatttcaaaacGCCCCCCACTTTTTTCTGTGCCGATttgaatattaaataaatatcacACATTCGGGGCAAGAATATGCTTTTTTGAATACAAGGACGGATCCAATGACAGGAATATAATGTCCTCTCCTCTCCGATCCTGTGAGGAAGACGAGGGCATGGTGGTTAATTCCGAGGGAGGAGATTTTGATGAAGAAGACGACGACCGAGACCTAGACGAGAACGCAAGCGACATAAACTCGCCGGCGGCGCCTCGGGAAACTGCAACACCAGCCGCGCCAGACGAAGAGGCAGATATATCAGACAGAGAGGTCCCGTGCAGGAAGAAAGGGCGGCCGAAGAAAAAGAAGGACACaaagaagaaagacaaagaggggAAACCTGTCAAAGCAAAAAAACGCAAGAAGATTGACAGCGATGTAGAGAGAGActcagacagagaaagagactaCGGCGAGAACTCGGACAGCGTAGCCAGCGACTATGGAtctggagagaaaaagaaaaagaagaaacataaagaaaggaaggagaagaaaaccaagaagaagaaaaaagtcgATGGGGACCGAGACAGCAGTCAGGAGGAATCAACAAAGCAGCCAATAGAGCAGAAGACCTCGGCCCAGCTGGCGAAGGAGTGGGGTCTGGAGGATGTTGATCATACCTTCACAGAGGAGGACTACAGGGAACTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCGATGATAGCCAAGAAGAATCCTAAGATCCCCATGTCAAAGATGATGACCATCCTGGGGGCCAAGTGGAGAGAGTTCAGCTCTAACAACCCCTTCAAGGGCAACGCTGCTGCTGTCGCGGCAGCCGCGGCAGCTGCTGCGATCGCTGTTGCCGAGCAGGTCTCCACAGCGAATGCCTCGCCTGAGCCACCGCCACCGCCGCCACCGCCGCCACCAATCAGAAAGGCAAAGACGAAAGAAGGCAAAGGCCCTGGCTTTAAAAAGCGCAGTAAAAGTCCTCGAGTCCCGGACAAGAAAAAGGCTGCAGCAAAGGCTAAAAAGATGGCACCCATTCGTATTAAGCTATCACCTATAGGTGCCAAGAGGAAGAAGAGTTGCTCAAGCGAGGACATGGATGAGGATGAGTCGGAGCAGGAGGACTCCAGCGTTCACAGCTCCTCGGTTCGCTCCGACAGCTCTGGTCGTGTCAAGAAGAACAAGCGAGGACGGCCtgccaaaaagaaaaagaaaattacaaTCCCAGGTGAAGAGGATGGCGACGGCTATGAGACAGATCATCAGGACTACTGCGAGGTGTGTCAGCAGGGCGGAGAGATCATCCTGTGTGACACTTGTCCTCGAGCTTACCACCTCGTCTGCCTTGAGCCTGAGCTGGACAAGGCCCCCGAGGGCAAGTGGAGCTGCCCGCACTGCGAAAAAGAAGGAATCCAGTGGGAAGCAAAGGACGAGGACTTTGAGGATTTCGAGGAGGACAGCGAGGACAGAGTGATATCAGAGGTCAGCATTGGGGTCCCCGCCGGggcagaggaggaagatgacGACCACATGGAGTTCTGTCGGGTGTGTAAAGACGGAGGTGAACTGTTGTGCTGCGACACCTGCACCTCCTCCTACCACATCCACTGTCTAAACCCGCCGCTGCCAGAGATCCCCAACGGAGAGTGGCTGTGTCCGCGATGCATGTGTCCGCCTATCAAAGGACGTGTCCAGAAGATCCTCCACTGGAGATGGGGTGAACCTCCGCCTCCCATCCCGGTTCCCCCCGCTCCTGACGCACCACCTGATGCCCCCCCGCCGCCACCCATGAAGGGCAGAGCCGAGAGAGAGTTCTTTGTCAAGTTGACTGGGCAGTCCTTCTGGCATTGTACCTGGATCACTGAGCTGCAGCTGGAGATCTTCCACTCTGTGATGTTCAGAAACTACCAGAGGAAGACGGACATGGACGAGCCTCCCAGTCTGGATTACGGGTCGGGCGGAGAGGACGAGAACGGAGTGGGAAAGAGCGAGAAGAGGAGGGCCAAGGACCCCCAGTACGCCATACTAGAAGACAAGTACTACAGATTTGGCATCAAGCCTGAGTGGATGATGATCCACCGCATCATCAACCACAGTGTGGATAAGAAGGGGACATACCACTACCTGGTGAAATGGAGGGACCTGACCTATGACCAGTGCACCTGGGAGAGAGATGACATGGACATCCCAGAATTTGCAATTTACAAGGGCAACTACTGGAAGCACAGAGATGCAATAATGAAGGAGGATCCAGACAAACCCAGGAGGATGAGGAGCAAGATCCAGGAGGGTGAAGAGGAGTCTCCTGCCTCGCCGGTCACTGATCCTACAATAAAATACGAGGAACAGCCCGACTTTGTCACATCGACGGGTGGGACGCTGCACCTGTACCAGCTGGAGGGTCTGAACTGGCTTCGGTTTTCCTGGGCTCAGGGCACAGACACCATCCTGGCAGACGAGATGGGCCTGGGCAAGACCATCCAGACCATTGTCTTCCTCTACTCACTCTTTAAAGAGGGTCACACTAAGGGTCCGTTCCTGGTCAGCGCTCCGCTCTCCACCATCATCAACTGGGAGAGGGAGTTTGAGATGTGGGCGCCCGACTTCTACGTGGTGACGTACACGGGAGACAAGGACAGCCGAGCTATCATCAGAGAGAACGAGTTCTCCTTCGACGACACAGCTGTCAAAGGAGGGAAGAAGGCCTTCAAACTGAGAAGAGAGGCTCCTATCAAATTCCACGTGCTGCTGACCTCCTACGAGTTGGTGACCATCGATCAGACGGCGCTCAAGTCCATCGACTGGGCCTGTCTGGTCGTGGACGAGGCTCACCGGCTCAAGAACAACCAGTCCAAGTTTTTCAGGCGTCTGAACGACTATAAGATCGACCACAAGCTGCTACTGACAGGAACTCCACTACAGAACAACCTGGAGGAGCTGTTTCACCTGCTCAACTTCCTCACACCCAACCGCTTCAATAACCTTGAAGGCTTCCTGGAAGAGTTTGCCGACATCTCCAAGGAGGACCAGATCAAGAAGCTCCACGACCTGCTGGGGCCTCACATGCTGCGGAGGCTGAAGGCAGACGTCTTCAAGAACATGCCCTCCAAAACCGAGCTGATTGTCAGAGTGGAGCTGAGCCCTATGCAGAAaaaatactacaAGCTGATTCTGACCAAGAACTTTGAGGCTCTGAACTCAAAAGGTGGAGGAAACCAGGTCTCCCTGCTCAACATTATGATGGACCTAAAGAAGTGCTGCAACCACCCCTACCTCTTCCCTGTCGCCTCCAtgGAAGCCCAAAAAACCCCAACCGGTGCTTACGAGGGGTCGGCCCTCACTAAGGCCTCTGGGAAACTGACGCTGTTGCAGAAGATGCTGAGTAAACTGAAAGAGCAGGGGCACCGAGTACTGGTCTTCTCACAGATGACTAAGATGCTGGATTTACTAGAAGATTTCTTAGACCATGAAGGTTACAAGTATGAAAGAATTGATGGAGGCGTCACAGGAGCGCTGAGACAAGAGGCCATTGACCGCTTCAATGCTCCTGGTGCTTGTCAGTTTTGTTTCTTGCTCTCCACCAGAGCGGGAGGTTTAGGCATCAACTTGGCCACAGCAGACACAGTTGTCATCTTCGACTCTGACTGGAACCCTCACAATGACATACAGGCGTTCAGTCGAGCCCACCGAATCGGGCAAGCCAACAAGGTGATGATCTACCGCTTCGTGACGCGAGCCAGCGTGGAGGAGCGCATCACCCAGGTGGCCAAGAGGAAGATGATGCTGACCCACCTGGTGGTCCGGCCAGGCCTGGGGTCCAAAGCTGGCTCCATGTCCAAACAGGAACTGGATGACATCCTCAAGTTTGGAACGGAAGAGCTCTTCAAGGATGAAGTCGAAcGTATGAAGAATAGTTCGGGGGATAAAGTTGAGGACGAGGGCAGCGTGATCCACTACGACAGCGTTGCCATTGAGAGGCTGCTGGACCGAAGCCAAGACGCCACAGACGACTCGGACGTCCAGAACATGAACGAGTACCTCAGCTCCTTCAAAGTGGCCCAGTACATGGTCCGAGAGGAGGATAAGATCGAGGAGATCGAGCGGGAGATCATCAAACAGGAGGAGAACGTGGATCCGGATTATTGGGAGAAACTGTTGCGGCATCACTACGAGCAGCAACAGGAGGACCTGGCGAGCAAACTGGGCAAAGGCAAGAGGAACCGCAAGCCTGTCAATTACAACGATGCTGCACAGGAAGACCAAGAGTGGCATGCTGACATTTCAGATAACCAGTCCGAGTATTCAGTGGGTTccgaggaggaggacgaggactTTGATGACCGGCCAGAAGGTCGACGGCAGTCACGTCGCCAGTTGAGGAATGAGAAGGATAAACCTCTGCCTCCTCTTTTGGCCAGAGTGGGAGGCAACCTTGAGGTGCTGGGCTTTAACACACGCCAGCGAAAGGCTTTCCTGAACGCAGTGATGCGCTGGGGGATGCCGTCTCAGGATGCTTTCTCCTCTCAGTGGCTGGTCAGAGACCTCAGGGGCAAGACTGAGAAAGAATTCAAAGCTTACGTGTCACTCTTCATGCGTCACTTATGCGAGCCAGTGGCTGACGGGGCGGAGACGTTCGCAGATGGTGTGCCGAGGGAGGGCCTGTGTCGCCAGCCAGTCCTCACCCGCATCGGCGTCATGTCTCTCGTCAAGAAGAAGATCCAGGAGTTTGAGCACATCAACGGGCGGTGGAGCCTTCCAGAGCTCAAGCCTGAGGTCATCATAAACAAATCCTCCTCCAGGGCCTCCTCTCCTGCCATGAAGACCACCACGCCCACCCCCGAAGCCAGCTATAACAACACACCTTGTACCTCAGAGCCAGCGACCCCTGCTCCATCAGACAAGCTGGAAAAGAAtggaaaggagggagagaaggacaAAGAGGAAGGCGAGGCCCAGTCTGACAAAGAGAAAgtgaaggagaaagaaaaggatgAGGGGAAAGAGGTGGACAGCAACAGGACTGCAGAGCCTGAGGAGCTTTCCTCCACGACAAAAGACACATCCCAAAATGCATCCCCTAATCAAAAAAATGAAGGCAAAGAGGACAGCGACATgaaaaaggaggagaagaaggaaacAACTGACACTTCAGCTGCCACAACAGAGGAGAAAAAGGTACAAGAGGAGagtaaagaagagaaaaaacaagACACAGAGGTCAAAGAAGAGAAATCAgGAGAAAAGCTGGGGGAGGAGAAGGAAAAAGATAAGCGGGAAGAGACACTCACAGCAACAGAAACGACAGATGCAAAGGATAAGACCGAGGTGTCTGATGTGAAGAAAGAGGAAGTCAAAGGTGAAAAGGATGCTGGGAAAGAAGTCAGAGCAGCAAGGGAGGATTTGCCCAAGGGTAACGGGAGGCCTCCCATTGAGCGACCTCGCTTTATGTTCAACATCGCAGACGGCGGCTTCACGGAGCTGCACACTCTCTGGCAGAATGAGGAGCGAGCTGCCATCTCCTCGGGGAAGATGAACGAGATCTGGCACCGCCGACACGACTTCTGGCTGCTGGCGGGAATCGTGATTCACGGCTACGCCCGGTGGCAGGACATCCAGAATGACCCCCAGTTCGCAATCGTCAATGAGCCTTTCAAATCGCAGGCCAACAAAGGCAACTTCCTGGAGATGAAGAACAAGTTCCTGGCTCGACGCTTCAAGCTGTTGGAGCAGGCGCTGGTGATAGAGGAGCAGTTGCGACGGGCGGCCTACCTGAACATGACCCAGGACCCCAGCCACCCGGCCATGGCGCTCAATGCGCGCTTTACAGAGGTGGAGTGCCTGGCGGAGTCACACCAGCATCTCAGCAAGGAGTCGCTGGCGGGCAACAAGCCAGCCAACGCTGTCCTGCACAAAGTGTTGAACCAGCTGGAGGAGCTGCTGAGTGACATGAAGGCCGATGTGACCCGGCTACCGGCCACGCTGTCCAGAGTCCCACCCATCGCCGCCCGTCTTCAAATGTCCGAGAGGAGCATCCTCAGCCGACTGGCCAGCAAGGGCACTGAAGCGCACACGCCCCCGCCCATACCTCCAGGACCCTACGCAACCCCTCACAACTACGGAGCCCACTTCACCCCCGCCCCCCCGAGCGCCCTATACATGGGAGGGGCCAATTACAGTCAGATGCCGCCCGGATCCTTCATATCAGAAGCCGCCGCCGCTGCTGGGGCCACCGGTGGAGCTGCTTGGGGAGCCGCCGGAGGGCCAAACGCTGCTTGCCAGAAGACCAAGGAGCACGATGTGGTGCAGCGGCAGCGAGTGGTGGACCTTTGGAAGGACGGCAAGTCCGAGGGGGCCATCGGGCAGGAGCTGAGGATGCCCAAGTCCACGGTGCACAGCATCATCGTCAAATACCGGCTCAGCAACACGGTGGAGAACCTGCCGCGCAACGGGCGACCAAAGAAACCCTGAGGAGACTCACAAAGAAGAGCGAGGTCATTTGGATAAAACATCCAGGAATTAAACAGAAATGTGACAGTGAAAGCTGAAAAGGAGAAATGAAAACTTGAATGCATGAGGAGGAAGTCCAAAAAGGATCCAAGGACAGAGCACTTTGACACTGCTGGAATGTGAGGAATATAAAGGGAGAAGAAAAGCTCACTCGATGTCTCAAATAAGGACAGGAGGCAAAAAGGAGAGGACATGAAAAGTAAAAAGATGTGGCGGCACTTGAAAGAAAACAAGTAATCAACTGCAGAAAGGGCCAAAATAAGAAGGGAGAGGTGAAAAGCTGTCTCTGAGATCAAGCACTAATGATgggtgg

Function

GO: NA

KEGG:

id description
K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194329 lncRNA downstream 22336 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 58174 17852399 ~ 17853814 (-) False smim20
TU194173 lncRNA downstream 148283 17762380 ~ 17763705 (-) True G143898
XR_005641722.1 lncRNA downstream 227035 17682075 ~ 17684953 (-) False LOC120573415
TU194348 lncRNA upstream 24242 17973899 ~ 18060553 (-) False LOC120573700
XR_005641476.1 lncRNA upstream 42488 17992145 ~ 18002471 (-) True LOC120572704
TU194367 lncRNA upstream 66592 18016249 ~ 18019306 (-) True G144037
TU194570 lncRNA upstream 219636 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 298786 18248443 ~ 18250057 (-) True LOC120573605
XM_039823201.1 mRNA downstream 41302 17864831 ~ 17870686 (-) True si:dkey-19b23.8
XM_039823395.1 mRNA downstream 58151 17852371 ~ 17853837 (-) True smim20
XM_039822624.1 mRNA downstream 121632 17766290 ~ 17790356 (-) False rbpjb
XM_039822625.1 mRNA downstream 121896 17764186 ~ 17790092 (-) False rbpjb
XM_039823437.1 mRNA upstream 7124 17956781 ~ 17966143 (-) True dnajc3b
XM_039821438.1 mRNA upstream 17121 17966778 ~ 17971356 (-) True cldn15a
XM_039823582.1 mRNA upstream 26296 17975953 ~ 17978588 (-) True fis1
XM_039821554.1 mRNA upstream 29062 17978719 ~ 17981175 (-) True zgc:103586
XM_039821553.1 mRNA upstream 29062 17978719 ~ 17981052 (-) False zgc:103586
XR_005641649.1 other downstream 90911 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 158999 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 662434 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 662434 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1868669 16019657 ~ 16043319 (-) True acap1
TU194343 other upstream 110535 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 164195 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 645445 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 745042 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 746439 18696096 ~ 18696169 (-) True trnan-guu_12