RNA id: XM_039823440.1


Basic Information

Item Value
RNA id XM_039823440.1
length 2867
RNA type mRNA
GC content 0.40
exon number 8
gene id trmt10b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18938118 ~ 18945452 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCACATGGAAGCGACACCTTTCTTAGGCATATTATCACTCTTTCTGCCTTTTAGATCACTAATATGTTGCTTTAATGTGTCATTTAGtgtatttaagaaaaaaagctattattttaaaaacatttagcgTTACGATATCAACACAGATATGACTTTTTGGCTTGTTAAATGCCACAAATAGAAACTAGATAAATGTTGACTGAAATGGCACATATAGGCTCAGATGTGTGTGAAATGCAGCTGAATGGAGTTTCAGAGGTGATGGATCTGCTTCAAATAGACGTGGAGACTGATGTGGTGGAAGACAGGGCAGGGAGAGAAGCTGCACCGTTTTCAAGAAATGTGTTGAGGAAGCAGCGACACTGGGAGAGGCAGCTGGCAGCGAAGAAAAgcaagaggaaagaagagaagcAGCGGAGGAAGCTTAACCGTGAGCAGGAGTCAGGTTCCCGCACAGATAATCCTCAGTTTACCAAACGAGTCATGAAAGCGATCACAAAAGAACGTTTAGCTGAGGCTCAGTCCACAGGACTCAAACTCTGCGTAGACCTGAGTATGACAGACAGCATGTCTGACAAGgagatCAGTCGACTGGCTGGCCAGTTAAGAAGACTGTACGGTTCAAACAAGAAGGCGATTCGACCATTTCACCTTCTCCTGACAGACCTGAGAGAAGACAGCCGTCTCTACAGAGAGTGCCTACGAATGAACGCAGGGTTCCTCAACTACATGATGGACATAACAGAAGAAAGCTGTCTGGACCTTTTTTCTCCAGAAACTGTTGTCTACCTCACACCAGATGCTGAAGAAGcttTAGAAACAGTGGATGCTGACAAGGTGTACGTCCTCGGTGGCCTTGTGGATGAAAGCATCCAGAAGAAGTTGAGCTTCTCAAGGGCCAGAGAACTGAGCGTCCACACGGCGAGGCTGCCCATAGACGAGTAcatggtgaaaaaaaacaatgccaaGAATTTCCACTCAAAGATCCTGGCTGTTAATCAGGTGTTTGACATCTTATTGACTTTCTGCAAAACTGGCAGCTGGACAGAAGCCCTGCAGGCATGGTTCCCCCAGGGGAAGGGTTATGTTGTTGCACCAGAGTTTTCCCTACCACTTTCCGTCCCTCCATCACAAACTTAGCATAGTGATTCATTTTCTGCCATGATTTATACAGAACCCTTTTTGCGTCCATGTTACTTACTTGAGGGGAGTTGATACAACGTGATGTGCCCGGTTAAGGAGAAATAACACACTGTTGTTTAACATTTCTGGGTATTGTTTACTTTTACCAACAACTGTAATATTGTTTATGGCTGGAAATGTTTAAAAGTTCTCATCtgactttttaataaaacaGTGGAACTTTTGTATTTTTACACTTTCTCAGGATTTTTTTGTTGAGTTCAGTAACACTAATAGTCTAATCTGTTTTTGTACATAAAATCTTAATGCAAATGTGTCTTAGTTTTTACATTGAATGATATGACACACAATATATTTGGCATTTCCACGTTTGCACaattttggttttggttttagTTTTGCAACTAAAAACTGAGAAAATTGTGTGTAGGTCTGTAAGTCTGCCAGCAGAGATAAAATGCATCATCCATCCAACTTAAAAATATTGACCTGAAGGCAAAGGATAAAAGAATTACAGAGCTgttccctgttttttttctgttatttttgaAAGATGTTGCCGACCATAGTTTCTGAAAGCTGCTTGTTAATGAATAAGCCAGTGCGTGTAGCGGATAGCTTTTGTTTGGGTCATTGTACTTGAACTGTTGTATATTGTTAGATATCTACTGTATGTTTCACTGTAATGCAGTGTTGTTGCACTTTTAAAGATTTTTCAGATTTATTTGCTAGAACATTTCTGCCTGATGTCCATTTTTGGTTGTAGAGTTTTGGTTAGCCTAACTGTTACGGCCTGAAAGAAGAGAGACAGGGTTGCAGCTGGAGAATGAACTTCAGTTATGCAGTCATGTTTTCCAAAGAACAGTGGATTTATCTCATGACCCCGGGTAAATCTTTATATGGCTTGTTCACTAATTTCTGTGTCATCTGATTCCTTGTTTATTTAAACAGACGTGACTGAAATAATGAGACGGATGACCAAAGGTCAAAGCACATTTGTGTTTACTACTAGATTACTTTTTTCAAATACATTATTTGGCTTTGTGCATAAGGTTGAATACTACCAACGTAACAGCAGTAGCTCATAACCTGTCTCAAGCAGAGTAGTAATTAAACTCTGTGTCTCCTAAATGATAAGACAGTGCTGTCTCAAGCACTCCCATCCAGCCAAGGTCATGGGAATGAAGTTAAATACACATAAATACTTCCTACACACAAACTGTACTGTTTGAAAGTCTCCTCAATCAAGATTCCATGACCTTTTTCTGTGCAAGTCTCCCGAACTTTCTACACGCATCCAGAGTTAAGCTGCTCTTGAGTTTTTCCATAACAGAAACGTACAGGAATATAATTAAACTAGTCTCAGAAAACATATGTTGTCCATTGACTGTGTTTTGATTGGCTTGAATGGATGTTGGAATACATTTGTTTTGGCTGAACATGATCTTCTCAATGTTATCTCATAGCAGTGGGGGAAATAACATGATTGTGAAATGTTGCTCTCTGGCAGTTAGAGCACCCACTTATCCTGAAAAAATTCACGGTCACGTTGCAGACTGCCTTCAGCTGTATACggtgtagacatacacgcggatagctcaaaatgcgtatagataacacgccacttggctttagaaagttgtgtgtatgtttacgcgaagtcatgatatgTGGTGGAAGATTTCTGTCAACAGACTGGGCAATAAAGAAGTTTCAAACAGA

Function

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194784 lncRNA downstream 1891 18935975 ~ 18936227 (-) True G144346
TU194729 lncRNA downstream 107803 18828464 ~ 18830315 (-) True G144303
TU194691 lncRNA downstream 237563 18700209 ~ 18700555 (-) True G144275
TU194639 lncRNA downstream 398537 18536147 ~ 18539581 (-) False c14h4orf48
XR_005641738.1 lncRNA downstream 688061 18248443 ~ 18250057 (-) True LOC120573605
TU194852 lncRNA upstream 17414 18962866 ~ 19056782 (-) False clcn3
XR_005641466.1 lncRNA upstream 48017 18993469 ~ 19001392 (-) False LOC120572676
TU194868 lncRNA upstream 49299 18994751 ~ 19002231 (-) True LOC120572676
TU194851 lncRNA upstream 67455 19012907 ~ 19037503 (-) False clcn3
TU194853 lncRNA upstream 67455 19012907 ~ 19014703 (-) False clcn3
XM_039822852.1 mRNA downstream 25443 18902966 ~ 18912675 (-) True LOC120573249
XM_039821855.1 mRNA downstream 52065 18878121 ~ 18886053 (-) True si:dkey-185m8.2
XM_039823086.1 mRNA downstream 92598 18842076 ~ 18845520 (-) True ankrd53
XM_039821567.1 mRNA downstream 236541 18665191 ~ 18701577 (-) False LOC120572304
XM_039822020.1 mRNA upstream 39180 18984632 ~ 18991780 (-) True ino80b
XM_039822019.1 mRNA upstream 39180 18984632 ~ 18989843 (-) False ino80b
XM_039822021.1 mRNA upstream 39180 18984632 ~ 18989720 (-) False ino80b
XM_039822023.1 mRNA upstream 39180 18984632 ~ 18989619 (-) False ino80b
XM_039822018.1 mRNA upstream 39180 18984632 ~ 18989619 (-) False ino80b
unassigned_transcript_708 other downstream 200966 18737082 ~ 18737152 (-) True trnag-gcc_1
unassigned_transcript_707 other downstream 238261 18699785 ~ 18699857 (-) True trnak-cuu_5
unassigned_transcript_706 other downstream 238621 18699425 ~ 18699497 (-) True trnak-cuu_4
unassigned_transcript_705 other downstream 239187 18698858 ~ 18698931 (-) True trnan-guu_14
unassigned_transcript_704 other downstream 239783 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_709 other upstream 19914 18965366 ~ 18965437 (-) True trnad-guc_5
unassigned_transcript_710 other upstream 21490 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_711 other upstream 25940 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_712 other upstream 119708 19065160 ~ 19065241 (-) True trnas-gcu_6
TU194942 other upstream 405058 19350510 ~ 19353292 (-) False LOC120572670

Expression Profile