RNA id: XM_039823566.1


Basic Information

Item Value
RNA id XM_039823566.1
length 1305
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120573672
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 790858 ~ 793879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCCTGCACCTGCATTTAACATGAGGAGAGTTACTCAAGGAACGGCAGTCCCTCCTCAACTCCCTCCACCCCCTGCACCAGCCCTCAACATGCGGCGAACAGAGGAGGCCTCTTCAAGCCTGGCCTACAGACCAACATGGCGAGGGGGAAGAATGACCGATACCATTCCCTGCTCTGCGGCTGAGGTCCACATCCTTAGCCTGCTGGAGACAATTAAACAGCAACAAGACCAGCTTGTGGCAAAGGTGAACTACCTCAGCAGCAGGCTGAACAGCACCCCGGGGCCAGATGTTGAAATGCCGGACAATATCCAGTTTCCCCTGGAACAACTGGAGGCAGTGGAggcatttgaaatgtttttaaaggaACCGTCAAATGGCCCAGCTCGACAGAGAGTGATTTCTTCTTTGGCCACCATTGGAGGTCAGGATGTGAAGAGGGTGACCTGGAACATCCTGGCCAGGCTCTTCACAGATGAGGTATCTCATCAGATCAACTGGAAGGGTGTTAATAACAAAAAGTCTTTCAGTAGGATGGCAACGAAGATCTTGCTTTTCAGTGCTGTGAGGAAAAACACAGTGACACGGTCAGCCACGGACGCAGAGGTCACCAAGCACGCAATCAGGTGGTTCAACCTGGCAGCGGATCGGGCAACGAGGAGACGTGTCCCGCCTCAAGCCACACAAACGGAGTAATAGGATAAATAAGCAATAAACTATATTTTTATTGAACTTCTTGTCGTTCACCAGTTAttcattttctgatattttagcTGTGTATTTCATTGAAGTTGTAGCCTAATGGATACATATTTTATGTCTGCACCGACCACCTAGGCCTATAAAGCACTAAATTAGGTTTTGACCacaaaatgaatgtaaagtaGCTTAGCCAACGTAGGATActatcacaaaaacagaataggAAGCTATAACTTATAACTTtccataaatgtaaatgacaATTTTATATTTCCATTGAGTAGTGATTACTTTTGTACAGTAAATTGATGTCTGGACTTGAACCTTTTCTGTTAGGCCTATTGACAATATTGTTAGGTTAAAAATACAAGGCAATGCAGATTTAAGATTAGACCTATATTGCTGTAGTAGCCTATAGACTAGGCCTAGTGATAGTTTTATCCTATGGTTTAGTTTATCCTATTTTTATCCTACAGCAAGAACAGAGGGGATtttgaaaatgagaaaaacgGGTCCAAAACGGACCCGGGCCAGATGAACCAGGAATTTTATGAGTCCATACGGGTCCGCAGCGGATGTGTTTATCAATTTGCGTGTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189235 lncRNA upstream 43968 746590 ~ 746890 (+) True G140313
TU189231 lncRNA upstream 130940 659708 ~ 659918 (+) True G140309
XR_005641416.1 lncRNA upstream 167823 621137 ~ 623035 (+) True LOC120572292
TU189214 lncRNA upstream 225981 564301 ~ 564877 (+) True G140292
TU189207 lncRNA upstream 287126 503461 ~ 503732 (+) True G140286
XR_005641742.1 lncRNA downstream 2829 796708 ~ 801154 (+) True LOC120573673
XR_005641407.1 lncRNA downstream 32109 825988 ~ 833455 (+) True LOC120572243
TU189269 lncRNA downstream 85221 879100 ~ 879497 (+) True G140341
TU189271 lncRNA downstream 86498 880377 ~ 880855 (+) True G140343
TU189285 lncRNA downstream 158376 952255 ~ 952469 (+) True G140354
XM_039823288.1 mRNA upstream 39203 748644 ~ 751655 (+) True LOC120573513
XM_039823429.1 mRNA upstream 246416 543129 ~ 544442 (+) True LOC120573607
XM_039823280.1 mRNA upstream 475407 314019 ~ 315451 (+) True LOC120573509
XM_039823563.1 mRNA upstream 720192 69341 ~ 70666 (+) True LOC120573670
XM_039823565.1 mRNA downstream 18664 812543 ~ 815209 (+) True LOC120573671
XM_039823310.1 mRNA downstream 69439 863318 ~ 890296 (+) True LOC120573524
XM_039823428.1 mRNA downstream 674485 1468364 ~ 1478441 (+) True grpel1
XM_039822939.1 mRNA downstream 694605 1488484 ~ 1505654 (+) True ccdc96
XM_039821371.1 mRNA downstream 714922 1508801 ~ 1519565 (+) True trmt10a
TU189223 other upstream 168269 621116 ~ 622589 (+) False LOC120572292
TU189184 other upstream 454682 335882 ~ 336176 (+) True G140263
TU189470 other downstream 924460 1718339 ~ 1725468 (+) False frem1a
TU189594 other downstream 1228218 2022097 ~ 2030627 (+) False G140582
TU189616 other downstream 1228713 2022592 ~ 2032225 (+) True G140594
TU189672 other downstream 1261560 2055439 ~ 2059367 (+) True G140613
TU189860 other downstream 2034173 2828052 ~ 2903571 (+) False ablim2

Expression Profile