RNA id: XM_039823613.1


Basic Information

Item Value
RNA id XM_039823613.1
length 3294
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120573701
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18126764 ~ 18133498 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGAATGCAGAGAAAATGAAGCTGTTTGCCATTGAGCAATGAGACTACATGGTCATGGCAAGGTCTCCGCTATAATTATGGTTTTACCTCCATCCCAGAGACTCTGGGTGGGGATGTTGGTGGTAATGGTAGTGGTTGAGTTCCCTGGAGCCCTGCAGAAGTGCATCTTTGACGAGGTTCAGGCTCAGGCCGGGGTGGTCCGAGCTGCACCCATCCACCCAGACAGCCCACCCAATGAGCCCAGACTTGAAGCCCAGGCCGGAACCTTTGGCCAACAAACCAATCGTCCAGGGCAGAGGGCATCATCTCTGCGTGGCCAGACACAGAGGAGAAGCCTGAGAAAGATGGCCCTGCCCACTACTGCCTCTCCACAGCCAATCAGGATCCAGACCTGGATTCCCACAGAGAGCAACAACCTATCAGAGGCTGAGAAAGAGAGGCTGGAAGCAGCGGTGCAGGAGGCTGTGAGGATGATGTCTTCTTTACTATCAgTGAACAGGGTATCGGGTCCGTTGCTGCTCAGCAGAGACATCAATAAATACTGCAAGTTTATCTGGAGGAATTCAAGTTCTGCTAACTACAACAGGTGTGGTCGAGCCAACAACAACTACAGAACTGAGACCTGTCTGGATGTAACGATCCCAGATGATCATCTGGCTGGATGTGATATTTACGCTGAGGCTGATTCACCTCGCAGGACTGAGCTCCGTCCTGAAGGGGCTGGACTCCCCAACACTGACTTCCTGCTGTACCTCCACACGCAGGCCACTGACAAGTGCAGAGCAGAGCCTAATGTCTTGGCCTACACTGTCCACTGTCAGACGGACACTCATGGACGACCTGTGGCCGGGGTGGTCGTCATCTGCAGGGACAGTCTGACAGGAGCCACTTACAGCCACCAGGCTATTGTACAGACTATCATCCATGAGCTGTTTCATACACTTGGTTTCTCTAAAGAGCTCTTCCACACCTGGAGAGACTGTTCATCCAAGTCTCAAgTGGCTGCTGGCTGTTCTCCTCGAGGCAAAGTGAGTCATTCTGATAGATCGGGCCAGATGAGGATTTACACCCCATCCCTCATTTCCACCTTGCAGAAGCACCTGGCATCTACTGACCCTGAGCTAGGGGGGCCGCTAGAGAACCTGGATGTTGCTCCAGGCAGAGTGTCCTCTCACTGGGAGTCCCGGGTCCTGCAGGGCTCCATCATGGCACCGGTGCTGGGGGACTCGCCCACAGTCCGGATCGACCCGGTCACCTTGGCTGCATTACAGGATACGGGCTGGTACACTGTTGACCTGAACCAGGCACAGAGTCTAGTCTGGGGAGATGgtgAAGGAGCTACGTTTGGTTCCCTGTCAACCTGTCGGAACAAGTCTTCATCTTTTTTCTGCACCGGCAGTGGATTTGGGTGTCATTATCTTCACCTCCACAAGGGGGAGTGCCAGACTGATCAACACCTGGAGGGATGTCGAGTGTATAAACCCCTCAAGAATGGAAGTGAATGTTGGATAGAGAAAAATGGCAGAGACGAAGACTGGAGCGGGGAGATCTTTGGTGTTCACAGCCGTTGCTTCTTCTCCAGTCTGACCAGacagAAGCAGACGGAGCtcagcagctctgtggaggGACGTTGTTACAGACACAGGTGTACTGGCCTGAACCGGTACCAAATCCAGGTGTCTGGCTCTGAATGGATGGACTGTCCACCAGGGGACAATATTCAGATAAAAGGATACCAGGGTTTAGTTCACTGCCCTGACAGGAGGTTATGTGTGTACGCTGACATTACCCCCCCTTCAGATGTTCTCAATACATTTCCTGTTTCTATCACAAGTGATTCGTATGAGACTTTAACTGCAGCCCAGACCTGGAGCTGGTCGCCCCTCAGACTCCCTGCAGAGCTCCCTGTGGCCTCGGTGCTCGGCGtcactgctgctgtgtgtctcctGGCTGCAGCTCTGCTGTCTCTCAGGAAACGTTGCTCCTGCAAGGTCCGGATCCACACTGCCCCAGAGGATCACACACTTTGATTTTTAtggcttgtttttttcttaGGCTAAATTATCATTTTCATTCATAAttagtttttacattttaattataattTGTATTAAAGAGGAAATACAGCAAAGTCATGAACATGATTTGCAGTGGACCATCCACTAGTTTCCTGCCCCACACATAATGGtaataaatgttaaaataatgaCAAACCAGGGCGAAACTGTTTTACAAAAGTACATTATTAACCGAATGACATAACCCCGCCCCCCCCTCTCTATATCAAGGATTGTTCAGAGTTGTTATTCTAACAGGAAGTATCACCATAAtgcaaaaccaacaacaatgaaaaataattaaacagaAGATTCTTCTTGTTTTAAGATGAACTCCTGCAGAGCTGCTGACAATTCTCATCTGGTGCTGAAGTAAGACGAAAGTTATTTCCCCTCAAAAAAAACTCTTAATGTGgtaatgcatttaaaaaagcagaaacttTTTTGCTCCTTTGTTTCCTCTTTTCTGCTGTAGTCCGATTGTCCAGGCGTTGTTCACTCGACTTGCTTGTGTTATGTTTTCGAAGGAGGAAAAGATCTTCTTTGATTCTGTCCTTGTTGAAGCTTGAAAGCTTTTCATAATTTTCATCACCCTGCTTTTCTCGAACCTGATGGCTGAGTGCTTCtttcttcatttattttctttatctgTCCGTGACTCTGTTGGATTTGTTCCATGTGCCTGTTTTCTTTATCATTAGCTTCGTTTCTCAGACTATTTATAATTTGTCAGTGGTAAAAAATGAACATGGTGCATTTTACTCTTAAGTACAATTCTGGGTAGGCCtactatttccattttctgctataTTTCTACTTTTCTAGCCTACATttaagagggaaatattgtactttgtccctccactacatttatctgacagctataGCTACtggttacttttcagattttaCATACACACTTagtaccatggatgtattaagagagctTTGTTACTAATACAAAAGTCAATGTTCTGAATACTTGTTTATAGTGATTTCACCATTATATCACAATTAATGTGACACTACTAAAGTTAGATAAAACGACTGACAGCACATTTTATAAGCAGATGTGTGGTTCTCATTTGACATTTATTCATGATATCTATTTTTTGTGATACTTCTGACTTCACTTTGGCCCAGAACAAGACTTGCTCAGATCCCTAACAGAGCGCCCTGTAGCCCCAACACTATGCTAAATAGAAATGATTTATTCAAAACCAATAGCAttaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194348 lncRNA downstream 66211 17973899 ~ 18060553 (-) False LOC120573700
TU194367 lncRNA downstream 107458 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 124293 17992145 ~ 18002471 (-) True LOC120572704
TU194329 lncRNA downstream 237112 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 272950 17852399 ~ 17853814 (-) False smim20
TU194570 lncRNA upstream 35795 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 114945 18248443 ~ 18250057 (-) True LOC120573605
TU194639 lncRNA upstream 402649 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 566711 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 694966 18828464 ~ 18830315 (-) True G144303
XM_039821852.1 mRNA downstream 30810 18084380 ~ 18095954 (-) True LOC120572515
XM_039823612.1 mRNA downstream 53219 18063276 ~ 18073545 (-) False LOC120573700
XM_039823609.1 mRNA downstream 53220 18060176 ~ 18073544 (-) False LOC120573700
XM_039823398.1 mRNA upstream 1921 18135419 ~ 18143670 (-) True lrp10
XM_039822636.1 mRNA upstream 35716 18169214 ~ 18173027 (-) True mrpl52
XM_039822639.1 mRNA upstream 52399 18185897 ~ 18218817 (-) False acin1b
XM_039822640.1 mRNA upstream 52399 18185897 ~ 18218817 (-) False acin1b
XM_039822638.1 mRNA upstream 52399 18185897 ~ 18218817 (-) True acin1b
TU194399 other downstream 3074 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 65609 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 305687 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 373775 17744954 ~ 17752989 (-) False tbc1d19
TU194122 other downstream 877210 17248088 ~ 17249554 (-) False LOC120572513
TU194667 other upstream 461604 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 561201 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 562598 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 564764 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 565360 18698858 ~ 18698931 (-) True trnan-guu_14

Expression Profile