RNA id: XM_039823622.1


Basic Information

Item Value
RNA id XM_039823622.1
length 2964
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120573707
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38952042 ~ 38955968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCTCGGCCCGGCGAGGAAGAGATTGGTCCTCCGCGAACGAAAGACACCGAAGACTCTCCGTCCACCGCCGCTGCCATGGTGACGTGCGACGACACCAGACTTCAAACGAGCGGCCCTGTTCAGGAGGTCGAAGGCAGCGGAGTAGACGTCATGTCCGTCAGCTCAACATCGCAAAAACAAGACGTGGAAACAGAGGAAGCCGATCACGAGGAGCGTGCGATATCGGAGCCGGCTGAAAGTAAAGAGAACGACAGCGATGACGGTGAAAGAGAAGAAGCGAATGACAGGGACGACGATTGGAAACCAGACAAAAGCCACGTAAAGCTGAAAGGAAGTGACTCTAAACAGCGGCCGAAGAcgacaaagaaacaaaaggcCAGGCGTAAGTCAAGGACTGAGAACAGTGGTGATGTTTTCTCCTGCAAAGTCTGCGGAGCTCAGCACAAATCAGAAGTCGCATTCGTCAAACACGCCTGGAGTCACGTGGACGATGCAGGAAGCGTCTGCGGAGTGTGCGGAGAGCTTTCGGAGTCCTCGGAGGCGTTGAAGGGTCATCTTCAAAGTTACCACAAAACCGGCGACCGCGGAGAGTCTCTCCTCGGTGTCCTCGGCCTCAATGAGCACGTGGCTGCCCACTCGGGGGAGAGACCGTACGAATGCGATGTCTGCCATGACGTTTTCGCGTTGAGTTTGTCCCTGGAGAATCACCGGAAACTCCACGAGGCGGGCGCGCCGCACAAATGTTACACTTGCCACAAAGTGTTCGCTAAGAAGGAACACTTAAAAGCTCACTGCGCGACTCACACCAACAAAAAGAAGCAGCTCTGCGGCGTGTGCGGCAAATCCCTCAGCGACTATAGGTCTCTATCCCGCCACAAGCTGACGCACTCCGGGGAGCGGCCTCACAGCTGTCGGGTTTGCGGGGATCGGTTCAAACTTCCCGGGACGCTGAGACAACACGAGAAGATTCACACGGACCGAGAGAGGTCGTACCTGTGCGACGTTTGCTGCAAGATGTTCATGACGAGCAAGCAGCTGCAGATCCACATGAGAATGCACACCAACGAGAAGCCCTACCACTGCGGCGAATGCGGCAGGGGCTTCAGCACCAAGGGACCGTTGACGGTTCACATGCGGATCCACACCGGAGAGACACCGTACAGCTGCCCGGACTGTGGCTGGGCCTTCAAGCGCAAGGTTAACCTGGATAACCACGTGACGGTGCACTCAGGCCTCAAACCGTTTGTTTGCGTGACTTGTGGGAAAGCGTGCGCTCGTAAAGCGTATTTGAAAGTCCACATGAGAACCCACAACGGGGAGAGACCGTACAAGTGTAAACTCTGCGATAAGGCTTTCACTCAGAgccactgcctgaaaacgcacatGAAGAGCCACCTGGTGGCCAACGCTGCACCGTGACACTGACAATAAGGGATGCCACGATACCAGAATGTTTGTTGTCAACAGCAATAACTGTGAAATTCCACGATTCTCGATACCCAACTCGTTACCACGGTAAAAACAAGGGCTGGCTATCAGTCGAGCCGTTAGAGTGCActattaaaggggaactatgcagttgttttagcttaatttaccttaactgaacagcttcggagtcattggaatggttatattaCTTTTGTTCgggttttttaatttatttttttaatttattttattacagagacagtgcatattaataaacatttctgtcaatatgCCAGAGTTAGCcagaaggctatttttcatctgcagtctctAGACAGATGGTAAAAAAGTCACCCTAAAAGAATGTAAAattacacatttacataacaataaatacatttaacataCATTTGATAAAAGGTAATATTAAAAAGGTCGAAAGGTGGTtgtctcgcttccccctagcgcctgtgagcggaaaaaacacccttgCAACATTCGGCAAGCGCTACACACATACCCGCGGCTACACGGCCCCATCCAGGAACCagctagctataagaacaaaGTAGCGATGGaatttttcacactatcgtcatggctgagctggcaaaaaagaagcagaaagctaggaaagcattttCGGAGGAACAGACAAAGAGGAacagcagactgaccgagcgaggacaCAAACACGAGTAGCCTAAATATCGGACCTGCGTTTTCAGAATGGCGagaactgagacaaacagaagCCTGCAAATCCGATGCTGACCTGGCGTTCTTGCTGCTGCACTTGTAAGTATCTTTGATCAGAAACTTGATCTGATCACAGAGTTTCTTGTCAacttgatgttggcaaacgcaagttgcttctgctCCGACCGCGCTCTAAGGCCATTGTAGGCAAAAAGAATAATGTTACATGTTAATAATGTTGAACAAATGCACATAaccagagggagaagatgggagGAGGAAGAGTTGCCAACAGGTTTTTACGACAgcgttgccaaatatctattccgaagctgtaggtggagctctatagagaaacctgcgagcaaaaagcaaGAAAACAGCGAcgaaattgccaaaactgcatagctcCCCTGTTCTGCTGTGCTGTAgatgttcttcttcttcagtatTTTTCAGCAGACTAAAACACTTGTAGGTGAATAAGCTGCCCCCGTAACGTCCGGAAGAATTGCATCTCCGGTACCTGCGTTACCTACAAAAACAAGTACCAGAAATTTAGCATTGACTGGTACAGCACCAtattttttctcctgtaatccCTACTGACAATGACCAAATTGATATGTAAATCGTCTCCAGTGAGACTGAATTATTGTTTTCTGCTATTTAATGTATGTATTCTTCAAGTTATGTAAAGAAAGGCTCCTGTACACTTTGCAAAGTTCATTGCATGTCACGCTGTGCGAGATGGCTCAAATAAAATCTTCAGTCCGTACAATCTCAGTTTTGATGTTGTCAGATGCTGAAATTAAAACCTGGTAAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203142 lncRNA upstream 14907 38859640 ~ 38937135 (+) False G150131
TU203146 lncRNA upstream 14907 38860573 ~ 38937135 (+) False G150131
TU203149 lncRNA upstream 14907 38860965 ~ 38937135 (+) False G150131
TU203137 lncRNA upstream 14907 38871436 ~ 38937135 (+) True G150131
TU203145 lncRNA upstream 23608 38870464 ~ 38928434 (+) False G150131
TU203188 lncRNA downstream 97247 39053215 ~ 39055869 (+) True G150153
TU203198 lncRNA downstream 144768 39100736 ~ 39102011 (+) True G150161
XM_039821976.1 mRNA upstream 21730 38915419 ~ 38930312 (+) True LOC120572657
XM_039823171.1 mRNA upstream 160129 38776453 ~ 38791913 (+) True LOC120573446
XM_039823173.1 mRNA upstream 160129 38776453 ~ 38791913 (+) False LOC120573446
XM_039823172.1 mRNA upstream 163521 38776453 ~ 38788521 (+) False LOC120573446
XM_039823106.1 mRNA upstream 362543 38586072 ~ 38589499 (+) True LOC120573393
XM_039821977.1 mRNA downstream 117390 39073358 ~ 39090901 (+) True LOC120572658
TU203181 other upstream 15442 38935408 ~ 38936600 (+) True G150148
TU203179 other upstream 28017 38917337 ~ 38924025 (+) False LOC120572657
TU203168 other upstream 68772 38880571 ~ 38883270 (+) True G150139
TU203058 other upstream 223951 38682331 ~ 38728091 (+) True G150081
TU203025 other upstream 430539 38506463 ~ 38521503 (+) True G150060
TU203192 other downstream 127954 39083922 ~ 39090869 (+) False LOC120572658

Expression Profile