RNA id: XR_005641442.1


Basic Information

Item Value
RNA id XR_005641442.1
length 270
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120572409
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8476414 ~ 8476831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTAAAGAAGAACTGCATCCTGAAAGAAACAAGAATGTGGGCTCTGATGATCTGAACTCTGCAGCTCTGAGGTTCCTTCCAAACACAATAAGGAACAGGAGGCCTGATCAGAGAGAGAAGTGGAGACTCAGGTTCTTTATAGCGCCAGCAGATAGACACAAGCAGCAATAGGACTGCAACTCTCAGTGGAACTGATGCTCTATATTCATCTGCTGCCAGAGTCAATggcaacattcttttattaaataaagttcCTATACTCATGGTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641443.1 lncRNA upstream 6845 8468699 ~ 8469569 (+) True LOC120572410
TU191554 lncRNA upstream 75875 8390815 ~ 8400539 (+) False LOC120573547
TU191555 lncRNA upstream 75875 8390815 ~ 8400539 (+) False LOC120573547
TU191553 lncRNA upstream 75875 8399668 ~ 8400539 (+) False LOC120573547
TU191493 lncRNA upstream 277239 8198847 ~ 8199175 (+) True G141967
TU191536 lncRNA downstream 2675 8479506 ~ 8496546 (+) False LOC120572397
TU191598 lncRNA downstream 138697 8615528 ~ 8616180 (+) False LOC120572401
TU191602 lncRNA downstream 176021 8652852 ~ 8689676 (+) False LOC120572403
XR_005641435.1 lncRNA downstream 212136 8688967 ~ 8689678 (+) True LOC120572403
TU191613 lncRNA downstream 269984 8746815 ~ 8747015 (+) False LOC120572381
XM_039821699.1 mRNA upstream 4285 8452933 ~ 8472129 (+) False LOC120572397
XM_039821695.1 mRNA upstream 28669 8445286 ~ 8447745 (+) True LOC120572394
XM_039821675.1 mRNA upstream 67542 8406907 ~ 8408872 (+) True LOC120572377
XM_039823338.1 mRNA upstream 75875 8394485 ~ 8400539 (+) True LOC120573547
XM_039823334.1 mRNA upstream 105594 8368140 ~ 8370820 (+) True LOC120573544
XM_039821686.1 mRNA downstream 20426 8497257 ~ 8502220 (+) True LOC120572388
XM_039821687.1 mRNA downstream 24112 8500943 ~ 8502220 (+) False LOC120572388
XM_039823340.1 mRNA downstream 93247 8570078 ~ 8571491 (+) True LOC120573551
XM_039821645.1 mRNA downstream 130134 8606965 ~ 8611199 (+) True LOC120572362
XM_039821705.1 mRNA downstream 137459 8614290 ~ 8616191 (+) True LOC120572401
unassigned_transcript_686 other upstream 63080 8412681 ~ 8413334 (+) True LOC120573548
TU191556 other upstream 63177 8412679 ~ 8413237 (+) False LOC120573548
XR_005641421.1 other upstream 478706 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other upstream 478707 7990198 ~ 7997707 (+) False LOC120572330
TU191297 other upstream 754777 7718020 ~ 7721637 (+) False LOC120573538
TU192067 other downstream 2041798 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2224354 10701185 ~ 10702028 (+) False LOC120573689
unassigned_transcript_690 other downstream 2563614 11040445 ~ 11040526 (+) True trnal-aag_7
XR_005641761.1 other downstream 2594612 11071443 ~ 11071506 (+) True LOC120573720
XR_005641763.1 other downstream 2594839 11071670 ~ 11071739 (+) True LOC120573722

Expression Profile