RNA id: XR_005641519.1


Basic Information

Item Value
RNA id XR_005641519.1
length 362
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120572955
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36299360 ~ 36305247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgaaggaggagtATGTGGTGGAGAAGGTTTTGGAACGCAGAGTGGTGAAGGGAAGAGTagagtttctgctgaaatggaagGGGTTCTCAGATGAGGATAACACATGGGAGCCACAAGACAACCTGGACTGCCCCGACCTTATCACCgagtacatgcagaaacacaaggagaaggaggagaagaagaaggaggagaaacggagaggaggagagggacccaAACATCACCACTGTCAGCACTGTGACAAATTCTTCACAAcatctggatatttaaagattcatcagagagttcacactggagagaatctacacagctgtgatcaatgtggggcagctttcacactacAGAGTAACCTAAAaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641575.1 lncRNA upstream 67365 36224182 ~ 36231995 (+) True LOC120573000
TU201802 lncRNA upstream 68751 35793631 ~ 36230609 (+) True G149229
TU201831 lncRNA upstream 85672 36171657 ~ 36213688 (+) True G149256
TU201776 lncRNA upstream 104919 35774884 ~ 36194441 (+) False G149212
TU201778 lncRNA upstream 104919 35898112 ~ 36194441 (+) False G149212
TU201787 lncRNA downstream 63153 36368400 ~ 36376886 (+) True G149216
TU201855 lncRNA downstream 81369 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA downstream 81369 36386616 ~ 36387723 (+) False G149274
TU201859 lncRNA downstream 83006 36388253 ~ 36388706 (+) True G149275
TU201864 lncRNA downstream 160079 36465326 ~ 36467797 (+) False LOC120572806
XM_039822343.1 mRNA upstream 169257 36117298 ~ 36130103 (+) True LOC120572849
XM_039822374.1 mRNA upstream 478913 35815893 ~ 35820447 (+) True LOC120572867
XM_039822478.1 mRNA upstream 497427 35799725 ~ 35801933 (+) True LOC120572944
XM_039823253.1 mRNA upstream 623716 35653002 ~ 35675644 (+) True LOC120573495
XM_039823252.1 mRNA upstream 725092 35560450 ~ 35574268 (+) True LOC120573494
XM_039822404.1 mRNA downstream 34384 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 65632 36370879 ~ 36401016 (+) True LOC120572637
XM_039822353.1 mRNA downstream 115588 36420835 ~ 36427296 (+) True LOC120572853
XM_039822350.1 mRNA downstream 139252 36444499 ~ 36453193 (+) True LOC120572851
XM_039822261.1 mRNA downstream 159214 36464461 ~ 36476242 (+) False LOC120572806
TU201730 other upstream 36988 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 47337 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 176642 36117298 ~ 36122718 (+) False LOC120572849
TU201707 other upstream 870317 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 1013626 35262223 ~ 35285734 (+) False LOC120572790
TU201846 other downstream 34401 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 34401 36339648 ~ 36343478 (+) False LOC120572889
TU202320 other downstream 632159 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 1045828 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1262666 37567913 ~ 37570708 (+) True G149671

Expression Profile