RNA id: XR_005641598.1



Basic Information


Item Value
RNA id XR_005641598.1
length 277
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120573024
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36481086 ~ 36481441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


catggtatagtaacgtgtttatattaataatagTCGGTTTGGTGTTTGAGGTGTCGTACATGGAGACGTGGAAAGGGAAGGTCCGTCCTCTTCTGTCCCAACACACTTCCTGTCCCTGTGACAGGACGTCCCGATTTGCTCTGTCTTGACTCGCCTCTTTGTGTTTCAGAGTGTGAGCCTGTCCAGCGCCGCGGAGAAGTCTCTGGAGCTCAGAGGGCCCTATGACATCACCAACCTGTATCCTTCCTATTGGTTCAGACACAAACTGTAGTCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201864 lncRNA upstream 13289 36465326 ~ 36467797 (+) False LOC120572806
TU201859 lncRNA upstream 92380 36388253 ~ 36388706 (+) True G149275
TU201855 lncRNA upstream 92965 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA upstream 93363 36386616 ~ 36387723 (+) False G149274
TU201787 lncRNA upstream 104200 36368400 ~ 36376886 (+) True G149216
TU202175 lncRNA downstream 11612 36493053 ~ 36531194 (+) True G149489
TU202179 lncRNA downstream 89194 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA downstream 104098 36585539 ~ 36587482 (+) False G149492
TU202223 lncRNA downstream 162611 36644052 ~ 36688498 (+) False G149524
TU202229 lncRNA downstream 178745 36660186 ~ 36662049 (+) True G149527
XM_039822261.1 mRNA upstream 4844 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA upstream 4844 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA upstream 4844 36464496 ~ 36476242 (+) True LOC120572806
XM_039822350.1 mRNA upstream 27893 36444499 ~ 36453193 (+) True LOC120572851
XM_039822353.1 mRNA upstream 53790 36420835 ~ 36427296 (+) True LOC120572853
XM_039822171.1 mRNA downstream 156056 36637497 ~ 36646194 (+) True LOC120572753
XM_039822416.1 mRNA downstream 169995 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA downstream 169995 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA downstream 170728 36652169 ~ 36657906 (+) False LOC120572900
XM_039821959.1 mRNA downstream 237045 36718486 ~ 36720358 (+) True LOC120572642
TU201846 other upstream 137508 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 137608 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 218714 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 229063 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 358368 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 455965 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 869634 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1086472 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1195554 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1195554 37676995 ~ 37681109 (+) False G149843

Expression Profile