RNA id: XR_005641655.1


Basic Information

Item Value
RNA id XR_005641655.1
length 475
lncRNA type intronic
GC content 0.43
exon number 2
gene id LOC120573176
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1036072 ~ 1036678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGGTTGCATTTTGGAGGGACTACCTGCTGGATGTTGAGGaGCAAGAGGGACCCTTGCAACTTGGGGGTATCCTGGCCTTTGCGACGGGAGCAAATGATATTCCACCCCTGGGCTTCTCCCCACTACCTTCAGTGGTTTTTCTCCATGAGCTGCCCCTCAGACAAGGCCGTCATTTACCCACCGCAAACACATGCATTAACTGCCTGCGGTTGCCAGTCCTGAAAAAATTCGAGGATTTTAAGGAAACTATggattttgcattaaaaaacacTCAGGGATTTGTTCAGGAATGACTTCCAAGAAGTCCttaatatacattattaaaatCTGTTGCCTGTTGAACTTGACTAAATTGAAGAGGCATCGTTGTCAATAACTCACCATTTcctaatacattattaatgtcttgtttaaacaattaaaaatggaaTAATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189291 lncRNA downstream 22890 1012965 ~ 1013182 (-) True G140360
TU189286 lncRNA downstream 83600 952156 ~ 952472 (-) True G140355
TU189277 lncRNA downstream 125397 910458 ~ 910675 (-) True G140349
TU189276 lncRNA downstream 132433 903408 ~ 903639 (-) True G140348
TU189266 lncRNA downstream 159726 875822 ~ 876346 (-) True G140338
TU189338 lncRNA upstream 30779 1067457 ~ 1067906 (-) True G140398
TU189341 lncRNA upstream 80308 1116986 ~ 1154711 (-) True G140400
TU189342 lncRNA upstream 117565 1154243 ~ 1154942 (-) True G140401
TU189345 lncRNA upstream 254230 1290908 ~ 1291288 (-) True G140404
TU189346 lncRNA upstream 254230 1290908 ~ 1319575 (-) False G140404
XM_039823311.1 mRNA downstream 122392 906545 ~ 913680 (-) True LOC120573525
XM_039823400.1 mRNA downstream 429354 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA downstream 429354 600634 ~ 606718 (-) True LOC120573590
XM_039823396.1 mRNA downstream 897835 135443 ~ 138237 (-) True LOC120573587
XM_039822937.1 mRNA upstream 446111 1482789 ~ 1488426 (-) True tada2b
XM_039822938.1 mRNA upstream 455596 1492274 ~ 1500316 (-) True LOC120573289
XM_039823242.1 mRNA upstream 513850 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 589213 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 589213 1625891 ~ 1649432 (-) False tspan5a
TU189195 other downstream 584402 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 608588 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 617066 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 618991 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 620204 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 1014803 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3118246 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3237973 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 3237973 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 3237973 4274651 ~ 4275274 (-) False G141027

Expression Profile