RNA id: XR_005641718.1


Basic Information

Item Value
RNA id XR_005641718.1
length 1661
lncRNA type inter_gene
GC content 0.46
exon number 11
gene id LOC120573411
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38400341 ~ 38407337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttccctcccttgtgattggcctaatgtgtttcacctgtgtcCCTGCCTTGTAgccacctgtcccttgttagtcCTCGTTATCCTGTGTATTTAGTGTTTCCTTGGTGTCTTGTCACATTATTACTTTATGTGCTGTCTGTGGTGCtgtgtgtcttgtttttgtggtttttgtGCTTTCTGTGCTTTCTGGGACTacttttgttttgctttctgcCAACCTCTGGACACTTTTTGGAAGTTTGGTTCATTAAATTCTTTTATCCCTATTTTTCTGAACATAGGTCTGCTGTCAGCCTGCTTGGCTGTCTGAATAATGttagcaggttggctgatgtaTTTCAGCGAGGTATAAAGTCTGGCATCATGGCAAACATTGATAATCTGGTTCCGGTACGAGTTGCCGTGCGACGCTGCGAGCCACAGGTGAGAGTTGGCCCAGAGAAGACCTTCACCTATGATTATGTGTTCGATCCCACTGCTAAACAAGAGGGGTTTAATACGACTGTGTCCCCCTTATTGTTTGGGCTTTTCACAGGCTACCATGCCACAGTTGCTGCATACGGCCAGAGGGGATCAGGGAAGACCTTCTCCATGGGAGGACCATGCACATCAGCTCAAGAAAATGACCCTTCAGTCGGCCTTATTCCACGAGTTCTCAGAAGGATCTTtgaggaaagggagaggaggacTGTGACTTTGGTCTGGCAGTGTCTTATCTGGAGATCTATAATGAGGACATATTGGACTTGCTATGTCCATCTAAAGATAAAGCTGGCCTCAACATTAGGGAGGACCCTGAAGAGGGCATAAAGATGAGTGACTGACATGTTCACAAAGAGCAAAGCACACATTGTCACATTTCTTTAAAGCTAGATGGAAAGATAAATCCTCATTCTTTACCTTGATGACCCCTTTTAAATCAGTACATGTTTAAATATAATCTAGTGTGTCAGCTTTTGTTTGTATTGAAAATAtgctgttttttaatttttcagtGGGTTTAACTGAGAAGCAGGTGTCCTCTGCCCGTGAGATGAGTGGCTTCAAAATTCCACCTTGTGGATCTGGTGGGTTCAGAAAGGCAAAATAAAGCCAAGGGGGAGCGTTTTAGGGAAGGCATCAATCTTGGCCTTCTGGCTTTGGATAATGTTATCAGTGCCTTGGGGGGGGAGAGCCAAAGAGGTAGCTTTGTTCCATACAGAGAGTCCAAGCTGACTCTGCTGCTCCAGGATTCTCTGGGAGGACACGGTTACTTTGATGATCACATGAGTCAGTCCAGGAGACTCTAACATGGAGGAGACACTGAACACCCTACGATATACAGATAGGGCacgacaaataaaaaataaacccatTGTTAACGTTGATGCCAAAGATTCGAAAATAAAATGCCTCCAACAGCAGGTTGAGGAGCTGCAGGGGAAGCTCCTCCATGCCTGTGGAGGAggagctctgctgctctctggGCCAGAGTCAGAGGAGACGGTGACTGAGCTGCTGGAAAGGAATCTCTCCCTGCAGGACATCAATAAACTAAGCGGGGAGCTGAGCCagaccCTCACTATTTTCGTCCTCCTTCATGTGTaatctgggccgtcagtcttgtgtccaCAGAAGCGtctggcccaatcccaaagtgagccctgaggactaaggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202855 lncRNA upstream 15831 38384053 ~ 38384510 (+) True G149932
TU202828 lncRNA upstream 32341 38253771 ~ 38368000 (+) False G149912
TU202846 lncRNA upstream 59916 38339894 ~ 38340425 (+) True G149925
TU202829 lncRNA upstream 77217 38322546 ~ 38323124 (+) True G149912
TU202767 lncRNA upstream 107796 38171271 ~ 38292545 (+) True G149881
XR_005641715.1 lncRNA downstream 51378 38457241 ~ 38480387 (+) False LOC120573410
TU203030 lncRNA downstream 57279 38463142 ~ 38518330 (+) False G150060
TU203033 lncRNA downstream 68368 38474231 ~ 38476269 (+) True G150063
TU203034 lncRNA downstream 68368 38474231 ~ 38494700 (+) False G150063
TU203036 lncRNA downstream 72547 38478410 ~ 38482190 (+) True LOC120573410
XM_039823128.1 mRNA upstream 47503 38347656 ~ 38352838 (+) False LOC120573406
XM_039823127.1 mRNA upstream 47503 38347714 ~ 38352838 (+) False LOC120573406
XM_039823113.1 mRNA upstream 147453 38229862 ~ 38252888 (+) True LOC120573398
XM_039823114.1 mRNA upstream 147453 38229862 ~ 38252888 (+) False LOC120573398
XM_039823097.1 mRNA upstream 294146 38064702 ~ 38106195 (+) False LOC120573389
XM_039823123.1 mRNA downstream 19014 38424877 ~ 38428658 (+) True LOC120573404
XM_039823122.1 mRNA downstream 46140 38452003 ~ 38456179 (+) True LOC120573403
XM_039823102.1 mRNA downstream 137255 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA downstream 137268 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA downstream 137268 38543131 ~ 38561745 (+) False LOC120573390
TU202802 other upstream 41484 38352481 ~ 38358857 (+) False LOC120573406
TU202803 other upstream 41484 38352481 ~ 38358857 (+) False LOC120573406
TU202805 other upstream 41484 38352481 ~ 38358857 (+) True LOC120573406
TU202807 other upstream 48508 38347564 ~ 38351833 (+) False LOC120573406
TU202761 other downstream 47562 38453425 ~ 38456157 (+) False G149880
TU202765 other downstream 47562 38453425 ~ 38457596 (+) False G149880
TU203025 other downstream 100600 38506463 ~ 38521503 (+) True G150060
TU203058 other downstream 276468 38682331 ~ 38728091 (+) True G150081
TU203168 other downstream 474708 38880571 ~ 38883270 (+) True G150139

Expression Profile